Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3253 and GFF3254 are separated by 97 nucleotides GFF3254 and GFF3255 are separated by 13 nucleotides GFF3255 and GFF3256 are separated by 6 nucleotides
GFF3253 - putative signaling protein, at 83,890 to 85,323
GFF3253
GFF3254 - Histidinol dehydrogenase, at 85,421 to 86,713
GFF3254
GFF3255 - hypothetical protein, at 86,727 to 87,224
GFF3255
GFF3256 - Arsenate reductase, at 87,231 to 87,692
GFF3256
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 84.663 kb on - strand, within GFF3253 at 84.727 kb on - strand, within GFF3253 at 84.813 kb on + strand, within GFF3253 at 84.814 kb on - strand, within GFF3253 at 84.814 kb on - strand, within GFF3253 at 84.814 kb on - strand, within GFF3253 at 85.259 kb on - strand at 86.722 kb on + strand at 86.722 kb on + strand at 86.723 kb on - strand at 86.901 kb on + strand, within GFF3255 at 87.022 kb on - strand, within GFF3255 at 87.022 kb on - strand, within GFF3255 at 87.022 kb on - strand, within GFF3255 at 87.022 kb on - strand, within GFF3255 at 87.042 kb on + strand, within GFF3255 at 87.042 kb on + strand, within GFF3255 at 87.042 kb on + strand, within GFF3255 at 87.042 kb on + strand, within GFF3255 at 87.043 kb on - strand, within GFF3255 at 87.045 kb on + strand, within GFF3255 at 87.045 kb on + strand, within GFF3255 at 87.045 kb on + strand, within GFF3255 at 87.045 kb on + strand, within GFF3255 at 87.046 kb on - strand, within GFF3255 at 87.046 kb on - strand, within GFF3255 at 87.046 kb on - strand, within GFF3255 at 87.357 kb on + strand, within GFF3256 at 87.357 kb on + strand, within GFF3256 at 87.358 kb on - strand, within GFF3256 at 87.358 kb on - strand, within GFF3256 at 87.358 kb on - strand, within GFF3256 at 87.358 kb on - strand, within GFF3256 at 87.358 kb on - strand, within GFF3256 at 87.358 kb on - strand, within GFF3256 at 87.477 kb on + strand, within GFF3256 at 87.477 kb on + strand, within GFF3256 at 87.478 kb on - strand, within GFF3256 at 87.478 kb on - strand, within GFF3256 at 87.478 kb on - strand, within GFF3256 at 87.478 kb on - strand, within GFF3256 at 87.478 kb on - strand, within GFF3256 at 87.573 kb on + strand, within GFF3256 at 87.573 kb on + strand, within GFF3256 at 87.574 kb on - strand, within GFF3256
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 84,663 - GFF3253 0.54 -0.3 84,727 - GFF3253 0.58 -0.4 84,813 + GFF3253 0.64 +1.5 84,814 - GFF3253 0.64 +1.1 84,814 - GFF3253 0.64 -0.5 84,814 - GFF3253 0.64 -3.0 85,259 - -0.2 86,722 + -1.1 86,722 + -0.3 86,723 - -1.1 86,901 + GFF3255 0.35 -2.0 87,022 - GFF3255 0.59 -1.5 87,022 - GFF3255 0.59 -3.1 87,022 - GFF3255 0.59 -1.1 87,022 - GFF3255 0.59 -1.3 87,042 + GFF3255 0.63 -2.9 87,042 + GFF3255 0.63 -2.4 87,042 + GFF3255 0.63 -3.2 87,042 + GFF3255 0.63 -2.7 87,043 - GFF3255 0.63 -0.0 87,045 + GFF3255 0.64 -1.4 87,045 + GFF3255 0.64 -2.1 87,045 + GFF3255 0.64 -2.7 87,045 + GFF3255 0.64 -2.1 87,046 - GFF3255 0.64 -2.9 87,046 - GFF3255 0.64 -2.2 87,046 - GFF3255 0.64 -1.0 87,357 + GFF3256 0.27 -1.0 87,357 + GFF3256 0.27 +0.5 87,358 - GFF3256 0.27 +0.6 87,358 - GFF3256 0.27 -0.1 87,358 - GFF3256 0.27 -0.1 87,358 - GFF3256 0.27 +0.7 87,358 - GFF3256 0.27 -2.5 87,358 - GFF3256 0.27 +1.3 87,477 + GFF3256 0.53 +0.1 87,477 + GFF3256 0.53 +0.1 87,478 - GFF3256 0.53 -0.0 87,478 - GFF3256 0.53 -0.1 87,478 - GFF3256 0.53 +0.3 87,478 - GFF3256 0.53 +0.9 87,478 - GFF3256 0.53 -1.3 87,573 + GFF3256 0.74 -1.3 87,573 + GFF3256 0.74 +0.5 87,574 - GFF3256 0.74 -0.0
Or see this region's nucleotide sequence