Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3239 and GFF3240 are separated by 79 nucleotides GFF3240 and GFF3241 are separated by 137 nucleotides GFF3241 and GFF3242 are separated by 113 nucleotides
GFF3239 - hypothetical protein, at 66,385 to 67,074
GFF3239
GFF3240 - Carbamoyl-phosphate synthase small chain, at 67,154 to 68,359
GFF3240
GFF3241 - putative protein YqeY, at 68,497 to 68,955
GFF3241
GFF3242 - Amino-acid carrier protein AlsT, at 69,069 to 70,484
GFF3242
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 66.196 kb on + strand at 66.317 kb on - strand at 66.391 kb on + strand at 66.391 kb on + strand at 66.392 kb on - strand at 66.449 kb on - strand at 66.449 kb on - strand at 66.449 kb on - strand at 66.449 kb on - strand at 66.487 kb on + strand, within GFF3239 at 66.487 kb on + strand, within GFF3239 at 66.488 kb on - strand, within GFF3239 at 66.488 kb on - strand, within GFF3239 at 66.488 kb on - strand, within GFF3239 at 66.666 kb on + strand, within GFF3239 at 66.666 kb on + strand, within GFF3239 at 66.800 kb on - strand, within GFF3239 at 66.964 kb on - strand, within GFF3239 at 66.964 kb on - strand, within GFF3239 at 66.964 kb on - strand, within GFF3239 at 67.023 kb on + strand at 67.072 kb on + strand at 67.073 kb on - strand at 67.073 kb on - strand at 68.373 kb on - strand at 68.704 kb on + strand, within GFF3241 at 68.705 kb on - strand, within GFF3241 at 68.754 kb on + strand, within GFF3241 at 68.758 kb on + strand, within GFF3241 at 69.170 kb on - strand at 69.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 66,196 + -0.3 66,317 - +0.6 66,391 + +1.1 66,391 + -0.4 66,392 - -0.5 66,449 - -0.5 66,449 - -0.1 66,449 - +0.5 66,449 - -0.0 66,487 + GFF3239 0.15 -1.5 66,487 + GFF3239 0.15 +0.6 66,488 - GFF3239 0.15 -0.1 66,488 - GFF3239 0.15 +0.4 66,488 - GFF3239 0.15 -1.4 66,666 + GFF3239 0.41 -1.9 66,666 + GFF3239 0.41 +0.1 66,800 - GFF3239 0.60 +0.2 66,964 - GFF3239 0.84 -1.9 66,964 - GFF3239 0.84 -0.5 66,964 - GFF3239 0.84 -0.9 67,023 + -0.1 67,072 + +0.1 67,073 - -0.6 67,073 - -1.2 68,373 - -0.7 68,704 + GFF3241 0.45 +1.5 68,705 - GFF3241 0.45 -0.3 68,754 + GFF3241 0.56 -0.5 68,758 + GFF3241 0.57 +0.9 69,170 - -1.0 69,170 - +0.1
Or see this region's nucleotide sequence