Strain Fitness in Xanthobacter sp. DMC5 around GFF3232

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3231 and GFF3232 are separated by 8 nucleotidesGFF3232 and GFF3233 are separated by 16 nucleotides GFF3231 - Glucose-6-phosphate 1-dehydrogenase, at 56,339 to 57,814 GFF3231 GFF3232 - 6-phosphogluconolactonase, at 57,823 to 58,533 GFF3232 GFF3233 - Glucose-6-phosphate isomerase, at 58,550 to 60,196 GFF3233 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1at 56.879 kb on + strand, within GFF3231at 56.879 kb on + strand, within GFF3231at 56.879 kb on + strand, within GFF3231at 56.880 kb on - strand, within GFF3231at 56.880 kb on - strand, within GFF3231at 56.880 kb on - strand, within GFF3231at 57.023 kb on + strand, within GFF3231at 57.023 kb on + strand, within GFF3231at 57.344 kb on + strand, within GFF3231at 57.610 kb on + strand, within GFF3231at 57.610 kb on + strand, within GFF3231at 57.610 kb on + strand, within GFF3231at 57.610 kb on + strand, within GFF3231at 57.611 kb on - strand, within GFF3231at 57.611 kb on - strand, within GFF3231at 57.611 kb on - strand, within GFF3231at 57.611 kb on - strand, within GFF3231at 57.734 kb on + strandat 58.144 kb on + strand, within GFF3232at 58.145 kb on - strand, within GFF3232at 58.254 kb on + strand, within GFF3232

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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56,879 + GFF3231 0.37 -0.4
56,879 + GFF3231 0.37 -0.4
56,879 + GFF3231 0.37 -1.0
56,880 - GFF3231 0.37 -2.0
56,880 - GFF3231 0.37 -0.9
56,880 - GFF3231 0.37 -0.5
57,023 + GFF3231 0.46 -0.3
57,023 + GFF3231 0.46 -0.4
57,344 + GFF3231 0.68 -0.5
57,610 + GFF3231 0.86 -0.1
57,610 + GFF3231 0.86 -0.5
57,610 + GFF3231 0.86 +0.9
57,610 + GFF3231 0.86 -0.8
57,611 - GFF3231 0.86 -0.1
57,611 - GFF3231 0.86 -1.7
57,611 - GFF3231 0.86 +0.3
57,611 - GFF3231 0.86 -0.9
57,734 + +1.0
58,144 + GFF3232 0.45 -0.2
58,145 - GFF3232 0.45 -0.5
58,254 + GFF3232 0.61 +0.6

Or see this region's nucleotide sequence