Strain Fitness in Xanthobacter sp. DMC5 around GFF3228

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3226 and GFF3227 are separated by 79 nucleotidesGFF3227 and GFF3228 are separated by 2 nucleotidesGFF3228 and GFF3229 are separated by 135 nucleotidesGFF3229 and GFF3230 are separated by 232 nucleotides GFF3226 - Lipid A biosynthesis lauroyltransferase, at 52,505 to 53,440 GFF3226 GFF3227 - N5-carboxyaminoimidazole ribonucleotide mutase, at 53,520 to 54,002 GFF3227 GFF3228 - N5-carboxyaminoimidazole ribonucleotide synthase, at 54,005 to 55,117 GFF3228 GFF3229 - hypothetical protein, at 55,253 to 55,528 GFF3229 GFF3230 - 30S ribosomal protein S21, at 55,761 to 55,991 GFF3230 Position (kb) 54 55 56Strain fitness (log2 ratio) -1 0 1at 53.512 kb on + strandat 55.309 kb on - strand, within GFF3229at 55.337 kb on + strand, within GFF3229

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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53,512 + +0.4
55,309 - GFF3229 0.20 +0.3
55,337 + GFF3229 0.30 -0.5

Or see this region's nucleotide sequence