Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3223 and GFF3224 are separated by 31 nucleotides GFF3224 and GFF3225 are separated by 21 nucleotides GFF3225 and GFF3226 are separated by 22 nucleotides
GFF3223 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 49,371 to 50,654
GFF3223
GFF3224 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 50,686 to 51,438
GFF3224
GFF3225 - Alcohol dehydrogenase, at 51,460 to 52,482
GFF3225
GFF3226 - Lipid A biosynthesis lauroyltransferase, at 52,505 to 53,440
GFF3226
Position (kb) 51
52
53 Strain fitness (log2 ratio) -1
0
1 at 50.764 kb on + strand, within GFF3224 at 50.782 kb on + strand, within GFF3224 at 50.968 kb on - strand, within GFF3224 at 50.968 kb on - strand, within GFF3224 at 51.142 kb on + strand, within GFF3224 at 51.142 kb on + strand, within GFF3224 at 51.143 kb on - strand, within GFF3224 at 51.224 kb on - strand, within GFF3224 at 51.224 kb on - strand, within GFF3224 at 51.224 kb on - strand, within GFF3224 at 51.375 kb on + strand at 51.375 kb on + strand at 51.375 kb on + strand at 51.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 50,764 + GFF3224 0.10 +1.4 50,782 + GFF3224 0.13 -0.1 50,968 - GFF3224 0.37 +0.3 50,968 - GFF3224 0.37 +1.2 51,142 + GFF3224 0.61 -0.5 51,142 + GFF3224 0.61 -0.0 51,143 - GFF3224 0.61 +1.0 51,224 - GFF3224 0.71 +0.9 51,224 - GFF3224 0.71 +0.7 51,224 - GFF3224 0.71 -1.1 51,375 + +0.7 51,375 + -0.4 51,375 + -0.7 51,447 + -0.4
Or see this region's nucleotide sequence