Strain Fitness in Xanthobacter sp. DMC5 around GFF3222

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3220 and GFF3221 are separated by 9 nucleotidesGFF3221 and GFF3222 overlap by 8 nucleotidesGFF3222 and GFF3223 are separated by 191 nucleotides GFF3220 - Acyl carrier protein AcpXL, at 47,229 to 47,510 GFF3220 GFF3221 - hypothetical protein, at 47,520 to 47,993 GFF3221 GFF3222 - hypothetical protein, at 47,986 to 49,179 GFF3222 GFF3223 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 49,371 to 50,654 GFF3223 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -1 0 1at 47.517 kb on + strandat 49.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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47,517 + -1.0
49,218 + -0.0

Or see this region's nucleotide sequence