Strain Fitness in Xanthobacter sp. DMC5 around GFF3204

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3203 and GFF3204 are separated by 47 nucleotidesGFF3204 and GFF3205 overlap by 34 nucleotidesGFF3205 and GFF3206 overlap by 1 nucleotides GFF3203 - hypothetical protein, at 27,806 to 28,969 GFF3203 GFF3204 - hypothetical protein, at 29,017 to 30,993 GFF3204 GFF3205 - Fructose import ATP-binding protein FrcA, at 30,960 to 31,718 GFF3205 GFF3206 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 31,718 to 32,419 GFF3206 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 28.259 kb on + strand, within GFF3203at 28.289 kb on + strand, within GFF3203at 28.289 kb on + strand, within GFF3203at 28.290 kb on - strand, within GFF3203at 28.376 kb on + strand, within GFF3203at 28.376 kb on + strand, within GFF3203at 28.376 kb on + strand, within GFF3203at 28.377 kb on - strand, within GFF3203at 28.392 kb on - strand, within GFF3203at 28.455 kb on + strand, within GFF3203at 28.456 kb on - strand, within GFF3203at 28.457 kb on + strand, within GFF3203at 28.481 kb on + strand, within GFF3203at 28.481 kb on + strand, within GFF3203at 28.481 kb on + strand, within GFF3203at 28.482 kb on - strand, within GFF3203at 28.494 kb on - strand, within GFF3203at 28.494 kb on - strand, within GFF3203at 28.494 kb on - strand, within GFF3203at 28.509 kb on + strand, within GFF3203at 28.529 kb on + strand, within GFF3203at 28.664 kb on - strand, within GFF3203at 28.689 kb on - strand, within GFF3203at 28.707 kb on + strand, within GFF3203at 28.856 kb on + strandat 28.856 kb on + strandat 28.859 kb on + strandat 28.860 kb on - strandat 28.860 kb on - strandat 28.860 kb on - strandat 28.860 kb on - strandat 28.943 kb on + strandat 28.943 kb on + strandat 28.944 kb on - strandat 29.129 kb on + strandat 29.161 kb on + strandat 29.326 kb on + strand, within GFF3204at 29.326 kb on + strand, within GFF3204at 29.327 kb on - strand, within GFF3204at 29.327 kb on - strand, within GFF3204at 29.327 kb on - strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.588 kb on - strand, within GFF3204at 29.636 kb on - strand, within GFF3204at 29.638 kb on - strand, within GFF3204at 29.791 kb on + strand, within GFF3204at 29.791 kb on + strand, within GFF3204at 29.791 kb on + strand, within GFF3204at 29.792 kb on - strand, within GFF3204at 29.792 kb on - strand, within GFF3204at 29.792 kb on - strand, within GFF3204at 29.872 kb on + strand, within GFF3204at 29.872 kb on + strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 30.105 kb on + strand, within GFF3204at 30.106 kb on - strand, within GFF3204at 30.185 kb on - strand, within GFF3204at 30.203 kb on - strand, within GFF3204at 30.203 kb on - strand, within GFF3204at 30.370 kb on + strand, within GFF3204at 30.370 kb on + strand, within GFF3204at 30.371 kb on - strand, within GFF3204at 30.371 kb on - strand, within GFF3204at 30.371 kb on - strand, within GFF3204at 30.388 kb on + strand, within GFF3204at 30.388 kb on + strand, within GFF3204at 30.389 kb on - strand, within GFF3204at 30.389 kb on - strand, within GFF3204at 30.395 kb on - strand, within GFF3204at 30.475 kb on + strand, within GFF3204at 30.476 kb on - strand, within GFF3204at 30.476 kb on - strand, within GFF3204at 30.476 kb on - strand, within GFF3204at 30.478 kb on + strand, within GFF3204at 30.478 kb on + strand, within GFF3204at 30.613 kb on + strand, within GFF3204at 30.614 kb on - strand, within GFF3204at 30.703 kb on + strand, within GFF3204at 30.703 kb on + strand, within GFF3204at 30.703 kb on + strand, within GFF3204at 30.703 kb on + strand, within GFF3204at 30.703 kb on + strand, within GFF3204at 30.703 kb on + strand, within GFF3204at 30.704 kb on - strand, within GFF3204at 30.797 kb on - strandat 30.814 kb on + strandat 30.814 kb on + strandat 30.815 kb on - strandat 30.815 kb on - strandat 31.098 kb on + strand, within GFF3205at 31.748 kb on + strandat 31.928 kb on + strand, within GFF3206at 31.928 kb on + strand, within GFF3206at 31.928 kb on + strand, within GFF3206at 31.929 kb on - strand, within GFF3206at 31.929 kb on - strand, within GFF3206

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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28,259 + GFF3203 0.39 +0.3
28,289 + GFF3203 0.41 +0.7
28,289 + GFF3203 0.41 +1.1
28,290 - GFF3203 0.42 -0.1
28,376 + GFF3203 0.49 -2.4
28,376 + GFF3203 0.49 +0.2
28,376 + GFF3203 0.49 +0.3
28,377 - GFF3203 0.49 -1.5
28,392 - GFF3203 0.50 -0.7
28,455 + GFF3203 0.56 -0.2
28,456 - GFF3203 0.56 -0.6
28,457 + GFF3203 0.56 -0.1
28,481 + GFF3203 0.58 +0.4
28,481 + GFF3203 0.58 -0.5
28,481 + GFF3203 0.58 +1.3
28,482 - GFF3203 0.58 +0.1
28,494 - GFF3203 0.59 +0.8
28,494 - GFF3203 0.59 +0.3
28,494 - GFF3203 0.59 -0.6
28,509 + GFF3203 0.60 -1.5
28,529 + GFF3203 0.62 -0.2
28,664 - GFF3203 0.74 +0.2
28,689 - GFF3203 0.76 -0.4
28,707 + GFF3203 0.77 +0.7
28,856 + +0.1
28,856 + +1.5
28,859 + +0.3
28,860 - +0.3
28,860 - -0.1
28,860 - -0.2
28,860 - +0.6
28,943 + -0.2
28,943 + -0.1
28,944 - +0.3
29,129 + +0.2
29,161 + +0.8
29,326 + GFF3204 0.16 -0.2
29,326 + GFF3204 0.16 -1.3
29,327 - GFF3204 0.16 -1.9
29,327 - GFF3204 0.16 -0.7
29,327 - GFF3204 0.16 +0.3
29,488 + GFF3204 0.24 -0.6
29,488 + GFF3204 0.24 -0.6
29,488 + GFF3204 0.24 -2.1
29,488 + GFF3204 0.24 +0.4
29,489 - GFF3204 0.24 -0.5
29,489 - GFF3204 0.24 +1.5
29,489 - GFF3204 0.24 +1.6
29,489 - GFF3204 0.24 +0.9
29,587 + GFF3204 0.29 -0.3
29,587 + GFF3204 0.29 -1.4
29,587 + GFF3204 0.29 -0.3
29,587 + GFF3204 0.29 +0.5
29,587 + GFF3204 0.29 +1.5
29,587 + GFF3204 0.29 +0.1
29,588 - GFF3204 0.29 -0.1
29,636 - GFF3204 0.31 -0.6
29,638 - GFF3204 0.31 +0.1
29,791 + GFF3204 0.39 +0.3
29,791 + GFF3204 0.39 +0.1
29,791 + GFF3204 0.39 -0.1
29,792 - GFF3204 0.39 +0.8
29,792 - GFF3204 0.39 -0.5
29,792 - GFF3204 0.39 +0.3
29,872 + GFF3204 0.43 +2.1
29,872 + GFF3204 0.43 +0.2
29,873 - GFF3204 0.43 +0.1
29,873 - GFF3204 0.43 +0.1
29,873 - GFF3204 0.43 +0.7
29,873 - GFF3204 0.43 +0.1
29,873 - GFF3204 0.43 -0.0
29,873 - GFF3204 0.43 -0.3
30,105 + GFF3204 0.55 -0.7
30,106 - GFF3204 0.55 +0.1
30,185 - GFF3204 0.59 +0.7
30,203 - GFF3204 0.60 +0.3
30,203 - GFF3204 0.60 -0.4
30,370 + GFF3204 0.68 +0.1
30,370 + GFF3204 0.68 +0.6
30,371 - GFF3204 0.68 +1.5
30,371 - GFF3204 0.68 +1.3
30,371 - GFF3204 0.68 +0.3
30,388 + GFF3204 0.69 -0.5
30,388 + GFF3204 0.69 -0.5
30,389 - GFF3204 0.69 +0.2
30,389 - GFF3204 0.69 +1.5
30,395 - GFF3204 0.70 -2.5
30,475 + GFF3204 0.74 +0.0
30,476 - GFF3204 0.74 +0.4
30,476 - GFF3204 0.74 -0.6
30,476 - GFF3204 0.74 -0.2
30,478 + GFF3204 0.74 +0.1
30,478 + GFF3204 0.74 -1.5
30,613 + GFF3204 0.81 -0.2
30,614 - GFF3204 0.81 -0.3
30,703 + GFF3204 0.85 +0.1
30,703 + GFF3204 0.85 -0.1
30,703 + GFF3204 0.85 -0.3
30,703 + GFF3204 0.85 +0.0
30,703 + GFF3204 0.85 -1.3
30,703 + GFF3204 0.85 -1.9
30,704 - GFF3204 0.85 -0.2
30,797 - +0.2
30,814 + +1.2
30,814 + +0.7
30,815 - +0.6
30,815 - +1.3
31,098 + GFF3205 0.18 -0.1
31,748 + -0.4
31,928 + GFF3206 0.30 -1.1
31,928 + GFF3206 0.30 -0.1
31,928 + GFF3206 0.30 -0.5
31,929 - GFF3206 0.30 +0.8
31,929 - GFF3206 0.30 +0.3

Or see this region's nucleotide sequence