Strain Fitness in Xanthobacter sp. DMC5 around GFF3200

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3198 and GFF3199 are separated by 41 nucleotidesGFF3199 and GFF3200 are separated by 125 nucleotidesGFF3200 and GFF3201 are separated by 21 nucleotidesGFF3201 and GFF3202 are separated by 264 nucleotides GFF3198 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 23,023 to 23,781 GFF3198 GFF3199 - Kynurenine formamidase, at 23,823 to 24,518 GFF3199 GFF3200 - Acylamidase, at 24,644 to 26,050 GFF3200 GFF3201 - putative HTH-type transcriptional regulator, at 26,072 to 26,626 GFF3201 GFF3202 - hypothetical protein, at 26,891 to 27,712 GFF3202 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 23.648 kb on - strand, within GFF3198at 23.674 kb on + strand, within GFF3198at 23.674 kb on + strand, within GFF3198at 23.674 kb on + strand, within GFF3198at 23.674 kb on + strand, within GFF3198at 23.675 kb on - strand, within GFF3198at 23.675 kb on - strand, within GFF3198at 23.675 kb on - strand, within GFF3198at 23.675 kb on - strand, within GFF3198at 24.144 kb on - strand, within GFF3199at 24.225 kb on + strand, within GFF3199at 24.226 kb on - strand, within GFF3199at 24.287 kb on - strand, within GFF3199at 24.287 kb on - strand, within GFF3199at 24.288 kb on + strand, within GFF3199at 24.288 kb on + strand, within GFF3199at 24.289 kb on - strand, within GFF3199at 24.528 kb on + strandat 24.528 kb on + strandat 24.548 kb on + strandat 24.548 kb on + strandat 24.549 kb on - strandat 24.554 kb on + strandat 24.554 kb on + strandat 24.554 kb on + strandat 24.554 kb on + strandat 24.554 kb on + strandat 24.554 kb on + strandat 24.555 kb on - strandat 24.555 kb on - strandat 24.555 kb on - strandat 24.555 kb on - strandat 24.555 kb on - strandat 24.555 kb on - strandat 24.914 kb on + strand, within GFF3200at 24.914 kb on + strand, within GFF3200at 24.915 kb on - strand, within GFF3200at 24.915 kb on - strand, within GFF3200at 25.433 kb on + strand, within GFF3200at 25.434 kb on - strand, within GFF3200at 25.451 kb on + strand, within GFF3200at 25.586 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.697 kb on + strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.698 kb on - strand, within GFF3200at 25.700 kb on + strand, within GFF3200at 25.701 kb on - strand, within GFF3200at 25.701 kb on - strand, within GFF3200at 25.701 kb on - strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.862 kb on + strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.863 kb on - strand, within GFF3200at 25.868 kb on + strand, within GFF3200at 25.868 kb on + strand, within GFF3200at 25.964 kb on + strandat 25.964 kb on + strandat 25.964 kb on + strandat 25.965 kb on - strandat 26.112 kb on + strandat 26.113 kb on - strandat 26.113 kb on - strandat 26.113 kb on - strandat 26.172 kb on + strand, within GFF3201at 26.292 kb on + strand, within GFF3201at 26.293 kb on - strand, within GFF3201at 26.293 kb on - strand, within GFF3201at 26.293 kb on - strand, within GFF3201at 26.379 kb on + strand, within GFF3201at 26.380 kb on - strand, within GFF3201at 26.514 kb on + strand, within GFF3201at 26.563 kb on + strand, within GFF3201at 26.563 kb on + strand, within GFF3201at 26.666 kb on - strandat 26.866 kb on + strandat 26.866 kb on + strandat 26.867 kb on - strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.943 kb on - strandat 26.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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23,648 - GFF3198 0.82 +0.1
23,674 + GFF3198 0.86 -0.1
23,674 + GFF3198 0.86 +0.6
23,674 + GFF3198 0.86 -0.1
23,674 + GFF3198 0.86 +0.5
23,675 - GFF3198 0.86 +0.9
23,675 - GFF3198 0.86 +0.2
23,675 - GFF3198 0.86 +1.0
23,675 - GFF3198 0.86 -0.7
24,144 - GFF3199 0.46 +0.6
24,225 + GFF3199 0.58 +0.3
24,226 - GFF3199 0.58 -0.1
24,287 - GFF3199 0.67 +0.5
24,287 - GFF3199 0.67 +0.7
24,288 + GFF3199 0.67 +0.4
24,288 + GFF3199 0.67 -1.4
24,289 - GFF3199 0.67 +1.0
24,528 + -1.4
24,528 + +0.5
24,548 + -0.7
24,548 + +0.6
24,549 - -1.0
24,554 + -0.0
24,554 + +1.2
24,554 + -0.4
24,554 + -0.6
24,554 + -0.8
24,554 + +1.3
24,555 - +0.8
24,555 - +0.6
24,555 - +0.3
24,555 - -2.1
24,555 - -1.2
24,555 - +0.6
24,914 + GFF3200 0.19 -0.1
24,914 + GFF3200 0.19 -0.6
24,915 - GFF3200 0.19 -1.2
24,915 - GFF3200 0.19 -0.0
25,433 + GFF3200 0.56 +0.4
25,434 - GFF3200 0.56 -0.4
25,451 + GFF3200 0.57 +0.0
25,586 + GFF3200 0.67 +0.5
25,697 + GFF3200 0.75 -0.0
25,697 + GFF3200 0.75 +0.8
25,697 + GFF3200 0.75 +0.1
25,697 + GFF3200 0.75 -1.1
25,698 - GFF3200 0.75 +0.2
25,698 - GFF3200 0.75 -0.1
25,698 - GFF3200 0.75 -0.7
25,698 - GFF3200 0.75 +0.6
25,698 - GFF3200 0.75 +0.8
25,698 - GFF3200 0.75 -0.6
25,698 - GFF3200 0.75 -0.4
25,700 + GFF3200 0.75 -1.9
25,701 - GFF3200 0.75 -1.5
25,701 - GFF3200 0.75 +0.1
25,701 - GFF3200 0.75 -0.9
25,862 + GFF3200 0.87 +0.4
25,862 + GFF3200 0.87 -0.0
25,862 + GFF3200 0.87 +0.7
25,862 + GFF3200 0.87 +0.2
25,863 - GFF3200 0.87 -1.0
25,863 - GFF3200 0.87 +0.4
25,863 - GFF3200 0.87 -0.7
25,863 - GFF3200 0.87 +0.1
25,868 + GFF3200 0.87 +0.3
25,868 + GFF3200 0.87 +0.3
25,964 + -0.1
25,964 + +0.3
25,964 + +0.7
25,965 - -0.7
26,112 + -1.4
26,113 - -2.5
26,113 - +0.4
26,113 - +0.0
26,172 + GFF3201 0.18 -0.6
26,292 + GFF3201 0.40 -0.1
26,293 - GFF3201 0.40 +0.7
26,293 - GFF3201 0.40 -0.5
26,293 - GFF3201 0.40 -0.0
26,379 + GFF3201 0.55 -1.0
26,380 - GFF3201 0.55 -0.0
26,514 + GFF3201 0.80 -0.1
26,563 + GFF3201 0.88 -1.1
26,563 + GFF3201 0.88 -0.9
26,666 - -2.3
26,866 + -1.4
26,866 + +0.1
26,867 - -1.0
26,942 + +0.2
26,942 + -0.4
26,942 + +0.9
26,942 + +2.5
26,943 - +0.5
26,945 - -0.2

Or see this region's nucleotide sequence