Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3193 and GFF3194 are separated by 25 nucleotides GFF3194 and GFF3195 are separated by 298 nucleotides
GFF3193 - Cytosine deaminase, at 16,516 to 17,757
GFF3193
GFF3194 - HTH-type transcriptional regulator ArgP, at 17,783 to 18,730
GFF3194
GFF3195 - Leu/Ile/Val-binding protein, at 19,029 to 20,231
GFF3195
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.027 kb on + strand, within GFF3193 at 17.027 kb on + strand, within GFF3193 at 17.027 kb on + strand, within GFF3193 at 17.028 kb on - strand, within GFF3193 at 17.028 kb on - strand, within GFF3193 at 17.028 kb on - strand, within GFF3193 at 17.099 kb on + strand, within GFF3193 at 17.100 kb on - strand, within GFF3193 at 17.218 kb on - strand, within GFF3193 at 17.219 kb on + strand, within GFF3193 at 17.474 kb on + strand, within GFF3193 at 17.710 kb on - strand at 17.710 kb on - strand at 18.292 kb on - strand, within GFF3194 at 18.371 kb on + strand, within GFF3194 at 18.372 kb on - strand, within GFF3194 at 18.537 kb on + strand, within GFF3194 at 18.538 kb on - strand, within GFF3194 at 18.709 kb on - strand at 18.794 kb on + strand at 18.911 kb on + strand at 18.953 kb on - strand at 18.954 kb on + strand at 18.954 kb on + strand at 18.954 kb on + strand at 18.955 kb on - strand at 19.007 kb on + strand at 19.269 kb on + strand, within GFF3195 at 19.269 kb on + strand, within GFF3195 at 19.269 kb on + strand, within GFF3195 at 19.270 kb on - strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.413 kb on + strand, within GFF3195 at 19.414 kb on - strand, within GFF3195 at 19.414 kb on - strand, within GFF3195 at 19.566 kb on + strand, within GFF3195 at 19.566 kb on + strand, within GFF3195 at 19.566 kb on + strand, within GFF3195
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 17,027 + GFF3193 0.41 -0.6 17,027 + GFF3193 0.41 +1.1 17,027 + GFF3193 0.41 -1.4 17,028 - GFF3193 0.41 -0.1 17,028 - GFF3193 0.41 +0.5 17,028 - GFF3193 0.41 -0.5 17,099 + GFF3193 0.47 +2.3 17,100 - GFF3193 0.47 -0.6 17,218 - GFF3193 0.57 -0.2 17,219 + GFF3193 0.57 +0.3 17,474 + GFF3193 0.77 +1.2 17,710 - +1.6 17,710 - -0.1 18,292 - GFF3194 0.54 +1.1 18,371 + GFF3194 0.62 +1.1 18,372 - GFF3194 0.62 -0.0 18,537 + GFF3194 0.80 -1.7 18,538 - GFF3194 0.80 +0.5 18,709 - -0.8 18,794 + +0.8 18,911 + +0.9 18,953 - +1.6 18,954 + -1.8 18,954 + -0.6 18,954 + -0.7 18,955 - -0.3 19,007 + +2.5 19,269 + GFF3195 0.20 -1.1 19,269 + GFF3195 0.20 -2.1 19,269 + GFF3195 0.20 -1.0 19,270 - GFF3195 0.20 -0.7 19,413 + GFF3195 0.32 -0.2 19,413 + GFF3195 0.32 -0.5 19,413 + GFF3195 0.32 -0.8 19,413 + GFF3195 0.32 -1.0 19,413 + GFF3195 0.32 +1.5 19,414 - GFF3195 0.32 -0.7 19,414 - GFF3195 0.32 -0.3 19,566 + GFF3195 0.45 -1.6 19,566 + GFF3195 0.45 -0.7 19,566 + GFF3195 0.45 +0.1
Or see this region's nucleotide sequence