Strain Fitness in Xanthobacter sp. DMC5 around GFF3186

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3184 and GFF3185 are separated by 9 nucleotidesGFF3185 and GFF3186 are separated by 18 nucleotidesGFF3186 and GFF3187 are separated by 58 nucleotides GFF3184 - 4-hydroxybenzoyl-CoA reductase subunit gamma, at 5,175 to 5,690 GFF3184 GFF3185 - hypothetical protein, at 5,700 to 6,314 GFF3185 GFF3186 - hypothetical protein, at 6,333 to 7,430 GFF3186 GFF3187 - hypothetical protein, at 7,489 to 8,463 GFF3187 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1 2at 5.625 kb on + strand, within GFF3184at 5.625 kb on + strand, within GFF3184at 5.626 kb on - strand, within GFF3184at 5.634 kb on + strand, within GFF3184at 5.634 kb on + strand, within GFF3184at 6.034 kb on - strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.317 kb on + strandat 6.318 kb on - strandat 6.335 kb on + strandat 6.340 kb on - strandat 6.340 kb on - strandat 6.421 kb on - strandat 6.421 kb on - strandat 6.517 kb on - strand, within GFF3186at 6.517 kb on - strand, within GFF3186at 6.613 kb on - strand, within GFF3186at 6.660 kb on + strand, within GFF3186at 6.720 kb on + strand, within GFF3186at 6.720 kb on + strand, within GFF3186at 6.721 kb on - strand, within GFF3186at 6.728 kb on + strand, within GFF3186at 6.728 kb on + strand, within GFF3186at 6.740 kb on + strand, within GFF3186at 6.740 kb on + strand, within GFF3186at 6.768 kb on + strand, within GFF3186at 6.769 kb on - strand, within GFF3186at 6.769 kb on - strand, within GFF3186at 6.917 kb on - strand, within GFF3186at 6.917 kb on - strand, within GFF3186at 6.924 kb on + strand, within GFF3186at 6.925 kb on - strand, within GFF3186at 7.072 kb on - strand, within GFF3186at 7.072 kb on - strand, within GFF3186at 7.072 kb on - strand, within GFF3186at 7.116 kb on + strand, within GFF3186at 7.116 kb on + strand, within GFF3186at 7.117 kb on - strand, within GFF3186at 7.117 kb on - strand, within GFF3186at 7.270 kb on - strand, within GFF3186at 7.423 kb on + strandat 7.483 kb on + strandat 7.483 kb on + strandat 7.483 kb on + strandat 7.483 kb on + strandat 7.484 kb on - strandat 7.484 kb on - strandat 7.484 kb on - strandat 7.484 kb on - strandat 7.660 kb on + strand, within GFF3187at 7.660 kb on + strand, within GFF3187at 7.660 kb on + strand, within GFF3187at 7.753 kb on + strand, within GFF3187at 7.753 kb on + strand, within GFF3187at 7.753 kb on + strand, within GFF3187at 7.754 kb on - strand, within GFF3187at 7.754 kb on - strand, within GFF3187at 7.754 kb on - strand, within GFF3187at 7.969 kb on + strand, within GFF3187at 7.970 kb on - strand, within GFF3187at 7.970 kb on - strand, within GFF3187at 7.970 kb on - strand, within GFF3187at 8.045 kb on - strand, within GFF3187at 8.064 kb on - strand, within GFF3187at 8.092 kb on + strand, within GFF3187at 8.093 kb on - strand, within GFF3187at 8.167 kb on + strand, within GFF3187at 8.197 kb on + strand, within GFF3187at 8.197 kb on + strand, within GFF3187at 8.198 kb on - strand, within GFF3187at 8.248 kb on + strand, within GFF3187at 8.248 kb on + strand, within GFF3187at 8.248 kb on + strand, within GFF3187at 8.248 kb on + strand, within GFF3187at 8.249 kb on - strand, within GFF3187at 8.249 kb on - strand, within GFF3187at 8.249 kb on - strand, within GFF3187at 8.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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5,625 + GFF3184 0.87 -0.1
5,625 + GFF3184 0.87 +2.3
5,626 - GFF3184 0.87 +0.5
5,634 + GFF3184 0.89 +0.6
5,634 + GFF3184 0.89 -0.7
6,034 - GFF3185 0.54 +0.1
6,118 + GFF3185 0.68 +0.2
6,118 + GFF3185 0.68 -1.5
6,118 + GFF3185 0.68 +0.2
6,118 + GFF3185 0.68 -0.0
6,118 + GFF3185 0.68 +1.2
6,119 - GFF3185 0.68 -0.3
6,119 - GFF3185 0.68 +0.7
6,119 - GFF3185 0.68 -1.0
6,119 - GFF3185 0.68 -0.4
6,119 - GFF3185 0.68 -0.9
6,317 + +0.4
6,318 - +0.8
6,335 + -0.7
6,340 - -0.1
6,340 - -0.1
6,421 - -1.1
6,421 - +0.1
6,517 - GFF3186 0.17 +0.5
6,517 - GFF3186 0.17 +0.1
6,613 - GFF3186 0.26 +0.4
6,660 + GFF3186 0.30 -1.4
6,720 + GFF3186 0.35 -1.5
6,720 + GFF3186 0.35 +1.3
6,721 - GFF3186 0.35 +0.4
6,728 + GFF3186 0.36 -0.0
6,728 + GFF3186 0.36 +0.3
6,740 + GFF3186 0.37 +0.5
6,740 + GFF3186 0.37 -0.0
6,768 + GFF3186 0.40 -0.4
6,769 - GFF3186 0.40 +0.9
6,769 - GFF3186 0.40 +0.4
6,917 - GFF3186 0.53 -0.4
6,917 - GFF3186 0.53 +0.1
6,924 + GFF3186 0.54 -0.7
6,925 - GFF3186 0.54 -0.9
7,072 - GFF3186 0.67 +1.1
7,072 - GFF3186 0.67 -0.3
7,072 - GFF3186 0.67 +1.1
7,116 + GFF3186 0.71 +0.1
7,116 + GFF3186 0.71 -0.6
7,117 - GFF3186 0.71 +0.0
7,117 - GFF3186 0.71 -0.3
7,270 - GFF3186 0.85 -1.1
7,423 + -0.1
7,483 + +1.0
7,483 + -0.1
7,483 + +0.1
7,483 + +1.0
7,484 - -0.1
7,484 - -0.5
7,484 - -0.9
7,484 - +0.1
7,660 + GFF3187 0.18 +0.2
7,660 + GFF3187 0.18 -0.1
7,660 + GFF3187 0.18 +0.1
7,753 + GFF3187 0.27 +0.0
7,753 + GFF3187 0.27 -0.4
7,753 + GFF3187 0.27 +1.6
7,754 - GFF3187 0.27 -1.7
7,754 - GFF3187 0.27 -0.9
7,754 - GFF3187 0.27 -0.0
7,969 + GFF3187 0.49 -0.6
7,970 - GFF3187 0.49 +1.3
7,970 - GFF3187 0.49 -0.2
7,970 - GFF3187 0.49 +1.3
8,045 - GFF3187 0.57 -0.3
8,064 - GFF3187 0.59 +0.4
8,092 + GFF3187 0.62 +0.5
8,093 - GFF3187 0.62 -1.2
8,167 + GFF3187 0.70 -1.1
8,197 + GFF3187 0.73 +0.1
8,197 + GFF3187 0.73 +0.2
8,198 - GFF3187 0.73 +0.4
8,248 + GFF3187 0.78 -0.0
8,248 + GFF3187 0.78 +0.4
8,248 + GFF3187 0.78 +0.2
8,248 + GFF3187 0.78 -0.2
8,249 - GFF3187 0.78 -0.6
8,249 - GFF3187 0.78 +0.1
8,249 - GFF3187 0.78 -0.8
8,413 - -0.6

Or see this region's nucleotide sequence