Strain Fitness in Xanthobacter sp. DMC5 around GFF3183

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3182 and GFF3183 are separated by 278 nucleotidesGFF3183 and GFF3184 are separated by 13 nucleotidesGFF3184 and GFF3185 are separated by 9 nucleotides GFF3182 - hypothetical protein, at 1,290 to 2,111 GFF3182 GFF3183 - hypothetical protein, at 2,390 to 5,161 GFF3183 GFF3184 - 4-hydroxybenzoyl-CoA reductase subunit gamma, at 5,175 to 5,690 GFF3184 GFF3185 - hypothetical protein, at 5,700 to 6,314 GFF3185 Position (kb) 2 3 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 1.497 kb on + strand, within GFF3182at 1.498 kb on - strand, within GFF3182at 1.536 kb on + strand, within GFF3182at 1.537 kb on - strand, within GFF3182at 1.665 kb on + strand, within GFF3182at 1.823 kb on + strand, within GFF3182at 1.824 kb on - strand, within GFF3182at 1.826 kb on - strand, within GFF3182at 1.888 kb on + strand, within GFF3182at 1.888 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.984 kb on - strand, within GFF3182at 1.998 kb on + strand, within GFF3182at 2.014 kb on - strand, within GFF3182at 2.096 kb on - strandat 2.096 kb on - strandat 2.096 kb on - strandat 2.150 kb on - strandat 2.173 kb on + strandat 2.174 kb on - strandat 2.299 kb on + strandat 2.299 kb on + strandat 2.322 kb on - strandat 2.422 kb on - strandat 2.585 kb on + strandat 2.585 kb on + strandat 2.585 kb on + strandat 2.585 kb on + strandat 2.586 kb on - strandat 2.586 kb on - strandat 2.780 kb on + strand, within GFF3183at 2.780 kb on + strand, within GFF3183at 2.780 kb on + strand, within GFF3183at 2.781 kb on - strand, within GFF3183at 2.822 kb on + strand, within GFF3183at 2.822 kb on + strand, within GFF3183at 2.822 kb on + strand, within GFF3183at 2.847 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.871 kb on - strand, within GFF3183at 2.948 kb on - strand, within GFF3183at 2.952 kb on - strand, within GFF3183at 2.952 kb on - strand, within GFF3183at 3.104 kb on + strand, within GFF3183at 3.105 kb on - strand, within GFF3183at 3.105 kb on - strand, within GFF3183at 3.105 kb on - strand, within GFF3183at 3.245 kb on + strand, within GFF3183at 3.245 kb on + strand, within GFF3183at 3.246 kb on - strand, within GFF3183at 3.246 kb on - strand, within GFF3183at 3.246 kb on - strand, within GFF3183at 3.246 kb on - strand, within GFF3183at 3.412 kb on + strand, within GFF3183at 3.413 kb on - strand, within GFF3183at 3.621 kb on - strand, within GFF3183at 3.621 kb on - strand, within GFF3183at 3.669 kb on - strand, within GFF3183at 3.669 kb on - strand, within GFF3183at 3.669 kb on - strand, within GFF3183at 3.669 kb on - strand, within GFF3183at 3.744 kb on - strand, within GFF3183at 4.017 kb on - strand, within GFF3183at 4.230 kb on - strand, within GFF3183at 4.230 kb on - strand, within GFF3183at 4.703 kb on + strand, within GFF3183at 4.704 kb on - strand, within GFF3183at 4.704 kb on - strand, within GFF3183at 4.782 kb on + strand, within GFF3183at 4.799 kb on + strand, within GFF3183at 4.800 kb on - strand, within GFF3183at 4.883 kb on + strand, within GFF3183at 4.952 kb on + strandat 4.952 kb on + strandat 4.953 kb on - strandat 4.953 kb on - strandat 5.625 kb on + strand, within GFF3184at 5.625 kb on + strand, within GFF3184at 5.626 kb on - strand, within GFF3184at 5.634 kb on + strand, within GFF3184at 5.634 kb on + strand, within GFF3184at 6.034 kb on - strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.118 kb on + strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185at 6.119 kb on - strand, within GFF3185

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,497 + GFF3182 0.25 +0.3
1,498 - GFF3182 0.25 -1.6
1,536 + GFF3182 0.30 +0.1
1,537 - GFF3182 0.30 -0.4
1,665 + GFF3182 0.46 -0.8
1,823 + GFF3182 0.65 -0.5
1,824 - GFF3182 0.65 +0.0
1,826 - GFF3182 0.65 -0.0
1,888 + GFF3182 0.73 -0.0
1,888 + GFF3182 0.73 +0.7
1,983 + GFF3182 0.84 +0.7
1,983 + GFF3182 0.84 -0.4
1,983 + GFF3182 0.84 +0.7
1,983 + GFF3182 0.84 +0.9
1,984 - GFF3182 0.84 -0.9
1,998 + GFF3182 0.86 -2.0
2,014 - GFF3182 0.88 -1.1
2,096 - -2.3
2,096 - -0.8
2,096 - -1.1
2,150 - +0.5
2,173 + -0.3
2,174 - +0.3
2,299 + -1.9
2,299 + -1.0
2,322 - +0.2
2,422 - +0.3
2,585 + +0.7
2,585 + +0.4
2,585 + -1.1
2,585 + -0.6
2,586 - -0.8
2,586 - +1.0
2,780 + GFF3183 0.14 -0.7
2,780 + GFF3183 0.14 -0.6
2,780 + GFF3183 0.14 -0.0
2,781 - GFF3183 0.14 -0.9
2,822 + GFF3183 0.16 +0.7
2,822 + GFF3183 0.16 -0.7
2,822 + GFF3183 0.16 +0.3
2,847 + GFF3183 0.16 -1.5
2,870 + GFF3183 0.17 -1.6
2,870 + GFF3183 0.17 +1.3
2,870 + GFF3183 0.17 -0.7
2,870 + GFF3183 0.17 -1.1
2,870 + GFF3183 0.17 +0.5
2,871 - GFF3183 0.17 -0.8
2,948 - GFF3183 0.20 -0.2
2,952 - GFF3183 0.20 -0.4
2,952 - GFF3183 0.20 +0.3
3,104 + GFF3183 0.26 -0.3
3,105 - GFF3183 0.26 -0.0
3,105 - GFF3183 0.26 -0.6
3,105 - GFF3183 0.26 -0.9
3,245 + GFF3183 0.31 +0.3
3,245 + GFF3183 0.31 +0.2
3,246 - GFF3183 0.31 -1.0
3,246 - GFF3183 0.31 -0.8
3,246 - GFF3183 0.31 -0.7
3,246 - GFF3183 0.31 +0.1
3,412 + GFF3183 0.37 -0.9
3,413 - GFF3183 0.37 -1.2
3,621 - GFF3183 0.44 +0.3
3,621 - GFF3183 0.44 -0.1
3,669 - GFF3183 0.46 -0.5
3,669 - GFF3183 0.46 -0.2
3,669 - GFF3183 0.46 +0.4
3,669 - GFF3183 0.46 +0.5
3,744 - GFF3183 0.49 +1.8
4,017 - GFF3183 0.59 -0.6
4,230 - GFF3183 0.66 -0.2
4,230 - GFF3183 0.66 -0.4
4,703 + GFF3183 0.83 -1.1
4,704 - GFF3183 0.83 -0.0
4,704 - GFF3183 0.83 -0.0
4,782 + GFF3183 0.86 +0.2
4,799 + GFF3183 0.87 -0.2
4,800 - GFF3183 0.87 -0.4
4,883 + GFF3183 0.90 -0.6
4,952 + +0.1
4,952 + +0.2
4,953 - +0.4
4,953 - +0.2
5,625 + GFF3184 0.87 -0.1
5,625 + GFF3184 0.87 +2.3
5,626 - GFF3184 0.87 +0.5
5,634 + GFF3184 0.89 +0.6
5,634 + GFF3184 0.89 -0.7
6,034 - GFF3185 0.54 +0.1
6,118 + GFF3185 0.68 +0.2
6,118 + GFF3185 0.68 -1.5
6,118 + GFF3185 0.68 +0.2
6,118 + GFF3185 0.68 -0.0
6,118 + GFF3185 0.68 +1.2
6,119 - GFF3185 0.68 -0.3
6,119 - GFF3185 0.68 +0.7
6,119 - GFF3185 0.68 -1.0
6,119 - GFF3185 0.68 -0.4
6,119 - GFF3185 0.68 -0.9

Or see this region's nucleotide sequence