Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3158 and GFF3159 are separated by 2 nucleotides GFF3159 and GFF3160 are separated by 92 nucleotides GFF3160 and GFF3161 are separated by 258 nucleotides
GFF3158 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 894,857 to 896,086
GFF3158
GFF3159 - hypothetical protein, at 896,089 to 896,577
GFF3159
GFF3160 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 896,670 to 898,697
GFF3160
GFF3161 - Propionyl-CoA carboxylase beta chain, at 898,956 to 900,488
GFF3161
Position (kb) 896
897
898
899 Strain fitness (log2 ratio) -1
0
1
2 at 895.711 kb on - strand, within GFF3158 at 895.898 kb on - strand, within GFF3158 at 895.898 kb on - strand, within GFF3158 at 895.900 kb on - strand, within GFF3158 at 895.900 kb on - strand, within GFF3158 at 895.900 kb on - strand, within GFF3158 at 895.900 kb on - strand, within GFF3158 at 895.900 kb on - strand, within GFF3158 at 896.007 kb on + strand at 896.208 kb on + strand, within GFF3159 at 896.208 kb on + strand, within GFF3159 at 896.209 kb on - strand, within GFF3159 at 896.209 kb on - strand, within GFF3159 at 896.271 kb on + strand, within GFF3159 at 896.272 kb on - strand, within GFF3159 at 896.316 kb on + strand, within GFF3159 at 896.317 kb on - strand, within GFF3159 at 896.317 kb on - strand, within GFF3159 at 896.318 kb on + strand, within GFF3159 at 896.319 kb on - strand, within GFF3159 at 896.319 kb on - strand, within GFF3159 at 896.319 kb on - strand, within GFF3159 at 896.429 kb on + strand, within GFF3159 at 896.429 kb on + strand, within GFF3159 at 896.430 kb on - strand, within GFF3159 at 896.430 kb on - strand, within GFF3159 at 896.430 kb on - strand, within GFF3159 at 896.430 kb on - strand, within GFF3159 at 896.443 kb on - strand, within GFF3159 at 896.466 kb on - strand, within GFF3159 at 896.544 kb on - strand at 896.941 kb on + strand, within GFF3160 at 897.566 kb on - strand, within GFF3160 at 897.679 kb on + strand, within GFF3160 at 897.938 kb on - strand, within GFF3160 at 898.453 kb on + strand, within GFF3160 at 898.454 kb on - strand, within GFF3160 at 898.730 kb on - strand at 898.730 kb on - strand at 898.730 kb on - strand at 898.774 kb on + strand at 899.272 kb on + strand, within GFF3161 at 899.647 kb on + strand, within GFF3161
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 895,711 - GFF3158 0.69 +1.5 895,898 - GFF3158 0.85 -0.9 895,898 - GFF3158 0.85 -0.7 895,900 - GFF3158 0.85 +0.4 895,900 - GFF3158 0.85 +1.0 895,900 - GFF3158 0.85 -0.4 895,900 - GFF3158 0.85 +0.1 895,900 - GFF3158 0.85 -0.6 896,007 + +0.0 896,208 + GFF3159 0.24 -1.4 896,208 + GFF3159 0.24 -0.8 896,209 - GFF3159 0.25 +0.1 896,209 - GFF3159 0.25 +2.0 896,271 + GFF3159 0.37 -1.3 896,272 - GFF3159 0.37 +1.1 896,316 + GFF3159 0.46 +0.0 896,317 - GFF3159 0.47 -1.2 896,317 - GFF3159 0.47 +1.2 896,318 + GFF3159 0.47 +0.8 896,319 - GFF3159 0.47 +1.4 896,319 - GFF3159 0.47 +0.1 896,319 - GFF3159 0.47 +0.4 896,429 + GFF3159 0.70 +0.6 896,429 + GFF3159 0.70 +0.9 896,430 - GFF3159 0.70 -0.4 896,430 - GFF3159 0.70 -1.0 896,430 - GFF3159 0.70 +0.0 896,430 - GFF3159 0.70 +1.6 896,443 - GFF3159 0.72 -0.4 896,466 - GFF3159 0.77 -0.5 896,544 - -0.3 896,941 + GFF3160 0.13 +0.4 897,566 - GFF3160 0.44 +0.0 897,679 + GFF3160 0.50 -0.2 897,938 - GFF3160 0.63 +0.4 898,453 + GFF3160 0.88 +0.4 898,454 - GFF3160 0.88 +0.5 898,730 - -0.5 898,730 - -1.5 898,730 - -0.3 898,774 + -0.5 899,272 + GFF3161 0.21 +0.1 899,647 + GFF3161 0.45 +0.2
Or see this region's nucleotide sequence