Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3153 and GFF3154 are separated by 51 nucleotides GFF3154 and GFF3155 overlap by 4 nucleotides GFF3155 and GFF3156 are separated by 15 nucleotides GFF3156 and GFF3157 are separated by 36 nucleotides
GFF3153 - hypothetical protein, at 888,789 to 889,295
GFF3153
GFF3154 - hypothetical protein, at 889,347 to 890,252
GFF3154
GFF3155 - putative methylmalonyl-CoA mutase large subunit, at 890,249 to 892,405
GFF3155
GFF3156 - hypothetical protein, at 892,421 to 892,804
GFF3156
GFF3157 - Methylmalonyl-CoA mutase small subunit, at 892,841 to 894,685
GFF3157
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -1
0
1
2 at 889.507 kb on + strand, within GFF3154 at 889.507 kb on + strand, within GFF3154 at 889.508 kb on - strand, within GFF3154 at 889.508 kb on - strand, within GFF3154 at 889.508 kb on - strand, within GFF3154 at 889.623 kb on - strand, within GFF3154 at 889.645 kb on + strand, within GFF3154 at 889.660 kb on + strand, within GFF3154 at 889.660 kb on + strand, within GFF3154 at 889.661 kb on - strand, within GFF3154 at 889.661 kb on - strand, within GFF3154 at 890.044 kb on + strand, within GFF3154 at 890.045 kb on - strand, within GFF3154 at 890.045 kb on - strand, within GFF3154 at 890.077 kb on + strand, within GFF3154 at 890.078 kb on - strand, within GFF3154 at 890.078 kb on - strand, within GFF3154 at 890.078 kb on - strand, within GFF3154 at 890.165 kb on - strand at 890.165 kb on - strand at 890.269 kb on + strand at 890.270 kb on - strand at 892.418 kb on - strand at 892.418 kb on - strand at 892.639 kb on - strand, within GFF3156
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 889,507 + GFF3154 0.18 +0.7 889,507 + GFF3154 0.18 +0.8 889,508 - GFF3154 0.18 -1.6 889,508 - GFF3154 0.18 +0.1 889,508 - GFF3154 0.18 +1.0 889,623 - GFF3154 0.30 +0.2 889,645 + GFF3154 0.33 +0.4 889,660 + GFF3154 0.35 +0.2 889,660 + GFF3154 0.35 -0.5 889,661 - GFF3154 0.35 +1.5 889,661 - GFF3154 0.35 -0.3 890,044 + GFF3154 0.77 -0.5 890,045 - GFF3154 0.77 +0.4 890,045 - GFF3154 0.77 +0.3 890,077 + GFF3154 0.81 -0.3 890,078 - GFF3154 0.81 -1.2 890,078 - GFF3154 0.81 -0.4 890,078 - GFF3154 0.81 -1.5 890,165 - +2.4 890,165 - +0.9 890,269 + -0.6 890,270 - -0.7 892,418 - -0.6 892,418 - +0.6 892,639 - GFF3156 0.57 -0.2
Or see this region's nucleotide sequence