Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3148 and GFF3149 are separated by 63 nucleotides GFF3149 and GFF3150 are separated by 121 nucleotides GFF3150 and GFF3151 are separated by 71 nucleotides
GFF3148 - Crotonyl-CoA reductase, at 883,982 to 884,998
GFF3148
GFF3149 - hypothetical protein, at 885,062 to 885,967
GFF3149
GFF3150 - hypothetical protein, at 886,089 to 886,880
GFF3150
GFF3151 - Aliphatic sulfonates import ATP-binding protein SsuB, at 886,952 to 887,698
GFF3151
Position (kb) 885
886 Strain fitness (log2 ratio) -1
0
1 at 884.133 kb on + strand, within GFF3148 at 884.133 kb on + strand, within GFF3148 at 884.178 kb on + strand, within GFF3148 at 884.316 kb on + strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.317 kb on - strand, within GFF3148 at 884.341 kb on - strand, within GFF3148 at 884.367 kb on + strand, within GFF3148 at 884.379 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.563 kb on + strand, within GFF3148 at 884.564 kb on - strand, within GFF3148 at 884.564 kb on - strand, within GFF3148 at 884.580 kb on + strand, within GFF3148 at 884.662 kb on - strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.862 kb on + strand, within GFF3148 at 884.863 kb on - strand, within GFF3148 at 884.926 kb on - strand at 884.926 kb on - strand at 885.088 kb on - strand at 885.204 kb on + strand, within GFF3149 at 885.204 kb on + strand, within GFF3149 at 885.204 kb on + strand, within GFF3149 at 885.204 kb on + strand, within GFF3149 at 885.204 kb on + strand, within GFF3149 at 885.205 kb on - strand, within GFF3149 at 885.205 kb on - strand, within GFF3149 at 886.040 kb on - strand at 886.241 kb on - strand, within GFF3150 at 886.351 kb on + strand, within GFF3150 at 886.351 kb on + strand, within GFF3150 at 886.352 kb on - strand, within GFF3150 at 886.352 kb on - strand, within GFF3150 at 886.640 kb on + strand, within GFF3150 at 886.640 kb on + strand, within GFF3150 at 886.641 kb on - strand, within GFF3150 at 886.669 kb on + strand, within GFF3150 at 886.669 kb on + strand, within GFF3150 at 886.669 kb on + strand, within GFF3150
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 884,133 + GFF3148 0.15 -1.0 884,133 + GFF3148 0.15 +0.5 884,178 + GFF3148 0.19 -0.2 884,316 + GFF3148 0.33 -1.0 884,317 - GFF3148 0.33 +1.5 884,317 - GFF3148 0.33 +0.5 884,317 - GFF3148 0.33 +0.1 884,317 - GFF3148 0.33 -0.5 884,317 - GFF3148 0.33 +1.4 884,341 - GFF3148 0.35 +0.2 884,367 + GFF3148 0.38 -0.1 884,379 + GFF3148 0.39 +0.0 884,563 + GFF3148 0.57 -1.1 884,563 + GFF3148 0.57 +0.4 884,563 + GFF3148 0.57 -0.5 884,563 + GFF3148 0.57 +0.2 884,563 + GFF3148 0.57 +0.3 884,564 - GFF3148 0.57 +0.4 884,564 - GFF3148 0.57 -0.4 884,580 + GFF3148 0.59 +0.1 884,662 - GFF3148 0.67 -0.7 884,862 + GFF3148 0.87 +1.3 884,862 + GFF3148 0.87 -0.5 884,862 + GFF3148 0.87 +0.7 884,862 + GFF3148 0.87 -0.3 884,863 - GFF3148 0.87 +1.1 884,926 - -0.5 884,926 - -1.2 885,088 - +0.4 885,204 + GFF3149 0.16 -0.4 885,204 + GFF3149 0.16 +0.6 885,204 + GFF3149 0.16 +0.0 885,204 + GFF3149 0.16 -1.6 885,204 + GFF3149 0.16 +0.6 885,205 - GFF3149 0.16 -0.7 885,205 - GFF3149 0.16 -0.6 886,040 - +0.6 886,241 - GFF3150 0.19 -0.1 886,351 + GFF3150 0.33 -0.1 886,351 + GFF3150 0.33 -0.0 886,352 - GFF3150 0.33 -0.5 886,352 - GFF3150 0.33 +0.0 886,640 + GFF3150 0.70 -0.7 886,640 + GFF3150 0.70 -0.3 886,641 - GFF3150 0.70 +0.2 886,669 + GFF3150 0.73 -1.0 886,669 + GFF3150 0.73 -0.5 886,669 + GFF3150 0.73 -0.2
Or see this region's nucleotide sequence