Strain Fitness in Xanthobacter sp. DMC5 around GFF3141

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3140 and GFF3141 are separated by 7 nucleotidesGFF3141 and GFF3142 are separated by 119 nucleotides GFF3140 - hypothetical protein, at 874,058 to 875,299 GFF3140 GFF3141 - hypothetical protein, at 875,307 to 876,224 GFF3141 GFF3142 - 1-deoxy-D-xylulose-5-phosphate synthase, at 876,344 to 878,275 GFF3142 Position (kb) 875 876 877Strain fitness (log2 ratio) -1 0 1at 874.784 kb on + strand, within GFF3140at 874.784 kb on + strand, within GFF3140at 875.297 kb on + strandat 876.223 kb on - strandat 876.235 kb on + strandat 876.235 kb on + strandat 876.286 kb on + strandat 876.304 kb on + strandat 876.304 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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874,784 + GFF3140 0.58 -0.0
874,784 + GFF3140 0.58 +0.2
875,297 + -1.1
876,223 - -1.0
876,235 + -1.3
876,235 + +0.5
876,286 + +0.8
876,304 + -0.3
876,304 + -0.6

Or see this region's nucleotide sequence