Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3135 and GFF3136 are separated by 195 nucleotides GFF3136 and GFF3137 are separated by 63 nucleotides GFF3137 and GFF3138 are separated by 96 nucleotides GFF3138 and GFF3139 overlap by 4 nucleotides
GFF3135 - ATP phosphoribosyltransferase regulatory subunit, at 869,765 to 870,928
GFF3135
GFF3136 - hypothetical protein, at 871,124 to 871,513
GFF3136
GFF3137 - Exodeoxyribonuclease 7 small subunit, at 871,577 to 871,852
GFF3137
GFF3138 - hypothetical protein, at 871,949 to 872,539
GFF3138
GFF3139 - hypothetical protein, at 872,536 to 873,912
GFF3139
Position (kb) 871
872 Strain fitness (log2 ratio) -1
0
1 at 871.403 kb on + strand, within GFF3136 at 871.404 kb on - strand, within GFF3136 at 871.439 kb on + strand, within GFF3136 at 871.439 kb on + strand, within GFF3136 at 871.439 kb on + strand, within GFF3136 at 871.440 kb on - strand, within GFF3136 at 871.544 kb on + strand at 871.545 kb on - strand at 871.954 kb on - strand at 871.954 kb on - strand at 871.954 kb on - strand at 872.772 kb on - strand, within GFF3139
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 871,403 + GFF3136 0.72 +0.9 871,404 - GFF3136 0.72 +0.8 871,439 + GFF3136 0.81 +0.9 871,439 + GFF3136 0.81 +0.6 871,439 + GFF3136 0.81 -0.5 871,440 - GFF3136 0.81 -0.2 871,544 + -0.5 871,545 - -0.5 871,954 - -0.1 871,954 - +1.1 871,954 - +0.7 872,772 - GFF3139 0.17 +0.5
Or see this region's nucleotide sequence