Strain Fitness in Xanthobacter sp. DMC5 around GFF3134

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3132 and GFF3133 are separated by 208 nucleotidesGFF3133 and GFF3134 are separated by 49 nucleotidesGFF3134 and GFF3135 overlap by 4 nucleotides GFF3132 - hypothetical protein, at 867,439 to 868,260 GFF3132 GFF3133 - hypothetical protein, at 868,469 to 868,741 GFF3133 GFF3134 - ATP phosphoribosyltransferase, at 868,791 to 869,768 GFF3134 GFF3135 - ATP phosphoribosyltransferase regulatory subunit, at 869,765 to 870,928 GFF3135 Position (kb) 868 869 870Strain fitness (log2 ratio) -2 -1 0 1 2at 867.843 kb on + strand, within GFF3132at 867.843 kb on + strand, within GFF3132at 867.844 kb on - strand, within GFF3132at 867.844 kb on - strand, within GFF3132at 867.844 kb on - strand, within GFF3132at 867.948 kb on - strand, within GFF3132at 868.289 kb on + strandat 868.310 kb on + strandat 868.416 kb on + strandat 868.424 kb on - strandat 868.617 kb on - strand, within GFF3133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
867,843 + GFF3132 0.49 +0.7
867,843 + GFF3132 0.49 -2.0
867,844 - GFF3132 0.49 +0.1
867,844 - GFF3132 0.49 -0.6
867,844 - GFF3132 0.49 -0.1
867,948 - GFF3132 0.62 +0.1
868,289 + +0.2
868,310 + +0.2
868,416 + -1.2
868,424 - -1.9
868,617 - GFF3133 0.54 +2.0

Or see this region's nucleotide sequence