Strain Fitness in Xanthobacter sp. DMC5 around GFF3130

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3129 and GFF3130 are separated by 149 nucleotidesGFF3130 and GFF3131 are separated by 41 nucleotides GFF3129 - Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme, at 860,598 to 863,561 GFF3129 GFF3130 - Aminopeptidase N, at 863,711 to 866,341 GFF3130 GFF3131 - hypothetical protein, at 866,383 to 867,243 GFF3131 Position (kb) 863 864 865 866 867Strain fitness (log2 ratio) -1 0 1 2at 863.559 kb on + strandat 863.576 kb on - strandat 863.576 kb on - strandat 864.117 kb on + strand, within GFF3130at 864.117 kb on + strand, within GFF3130at 864.117 kb on + strand, within GFF3130at 864.117 kb on + strand, within GFF3130at 864.255 kb on - strand, within GFF3130at 864.348 kb on + strand, within GFF3130at 864.348 kb on + strand, within GFF3130at 864.348 kb on + strand, within GFF3130at 864.348 kb on + strand, within GFF3130at 864.348 kb on + strand, within GFF3130at 864.349 kb on - strand, within GFF3130at 864.940 kb on - strand, within GFF3130at 864.940 kb on - strand, within GFF3130at 865.002 kb on + strand, within GFF3130at 865.003 kb on - strand, within GFF3130at 865.102 kb on - strand, within GFF3130at 865.102 kb on - strand, within GFF3130at 865.102 kb on - strand, within GFF3130at 865.194 kb on + strand, within GFF3130at 865.458 kb on + strand, within GFF3130at 865.459 kb on - strand, within GFF3130at 865.497 kb on + strand, within GFF3130at 865.497 kb on + strand, within GFF3130at 865.497 kb on + strand, within GFF3130at 865.497 kb on + strand, within GFF3130at 865.497 kb on + strand, within GFF3130at 865.498 kb on - strand, within GFF3130at 865.498 kb on - strand, within GFF3130at 865.498 kb on - strand, within GFF3130at 865.588 kb on - strand, within GFF3130at 865.680 kb on + strand, within GFF3130at 865.680 kb on + strand, within GFF3130at 865.680 kb on + strand, within GFF3130at 865.680 kb on + strand, within GFF3130at 865.681 kb on - strand, within GFF3130at 865.681 kb on - strand, within GFF3130at 865.681 kb on - strand, within GFF3130at 865.767 kb on + strand, within GFF3130at 865.768 kb on - strand, within GFF3130at 865.768 kb on - strand, within GFF3130at 865.803 kb on + strand, within GFF3130at 865.803 kb on + strand, within GFF3130at 865.804 kb on - strand, within GFF3130at 865.804 kb on - strand, within GFF3130at 865.804 kb on - strand, within GFF3130at 865.804 kb on - strand, within GFF3130at 865.932 kb on + strand, within GFF3130at 865.935 kb on + strand, within GFF3130at 865.935 kb on + strand, within GFF3130at 865.935 kb on + strand, within GFF3130at 865.935 kb on + strand, within GFF3130at 865.935 kb on + strand, within GFF3130at 865.936 kb on - strand, within GFF3130at 866.301 kb on + strandat 866.384 kb on + strandat 866.409 kb on + strandat 866.512 kb on + strand, within GFF3131at 866.513 kb on - strand, within GFF3131at 867.309 kb on + strandat 867.340 kb on + strandat 867.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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863,559 + -1.4
863,576 - -1.0
863,576 - +2.0
864,117 + GFF3130 0.15 +1.4
864,117 + GFF3130 0.15 +0.3
864,117 + GFF3130 0.15 +0.9
864,117 + GFF3130 0.15 +0.2
864,255 - GFF3130 0.21 +1.1
864,348 + GFF3130 0.24 +0.4
864,348 + GFF3130 0.24 -0.1
864,348 + GFF3130 0.24 -0.9
864,348 + GFF3130 0.24 +0.1
864,348 + GFF3130 0.24 +0.2
864,349 - GFF3130 0.24 -0.1
864,940 - GFF3130 0.47 -1.2
864,940 - GFF3130 0.47 +0.5
865,002 + GFF3130 0.49 +0.3
865,003 - GFF3130 0.49 +0.8
865,102 - GFF3130 0.53 -0.6
865,102 - GFF3130 0.53 +0.8
865,102 - GFF3130 0.53 +0.3
865,194 + GFF3130 0.56 +0.6
865,458 + GFF3130 0.66 +0.8
865,459 - GFF3130 0.66 +0.4
865,497 + GFF3130 0.68 +0.8
865,497 + GFF3130 0.68 +0.7
865,497 + GFF3130 0.68 +0.1
865,497 + GFF3130 0.68 +0.1
865,497 + GFF3130 0.68 +0.4
865,498 - GFF3130 0.68 +0.5
865,498 - GFF3130 0.68 +2.0
865,498 - GFF3130 0.68 -1.0
865,588 - GFF3130 0.71 -1.0
865,680 + GFF3130 0.75 -0.2
865,680 + GFF3130 0.75 -0.3
865,680 + GFF3130 0.75 -0.8
865,680 + GFF3130 0.75 +0.2
865,681 - GFF3130 0.75 +1.4
865,681 - GFF3130 0.75 +1.2
865,681 - GFF3130 0.75 +1.2
865,767 + GFF3130 0.78 +0.8
865,768 - GFF3130 0.78 -0.7
865,768 - GFF3130 0.78 -0.0
865,803 + GFF3130 0.80 +0.2
865,803 + GFF3130 0.80 +0.3
865,804 - GFF3130 0.80 -0.3
865,804 - GFF3130 0.80 +0.1
865,804 - GFF3130 0.80 +1.5
865,804 - GFF3130 0.80 +1.4
865,932 + GFF3130 0.84 -1.1
865,935 + GFF3130 0.85 -0.2
865,935 + GFF3130 0.85 +1.0
865,935 + GFF3130 0.85 +1.4
865,935 + GFF3130 0.85 +0.2
865,935 + GFF3130 0.85 +0.7
865,936 - GFF3130 0.85 +0.5
866,301 + +0.5
866,384 + +0.2
866,409 + +0.6
866,512 + GFF3131 0.15 +0.3
866,513 - GFF3131 0.15 +0.0
867,309 + +0.8
867,340 + +0.0
867,340 + +1.0

Or see this region's nucleotide sequence