Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3128 and GFF3129 are separated by 156 nucleotides GFF3129 and GFF3130 are separated by 149 nucleotides
GFF3128 - Adaptive-response sensory-kinase SasA, at 858,984 to 860,441
GFF3128
GFF3129 - Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme, at 860,598 to 863,561
GFF3129
GFF3130 - Aminopeptidase N, at 863,711 to 866,341
GFF3130
Position (kb) 860
861
862
863
864 Strain fitness (log2 ratio) -1
0
1
2 at 860.478 kb on - strand at 860.499 kb on - strand at 860.509 kb on - strand at 860.587 kb on + strand at 860.588 kb on - strand at 861.198 kb on + strand, within GFF3129 at 861.417 kb on + strand, within GFF3129 at 861.420 kb on + strand, within GFF3129 at 861.456 kb on + strand, within GFF3129 at 862.097 kb on + strand, within GFF3129 at 863.559 kb on + strand at 863.576 kb on - strand at 863.576 kb on - strand at 864.117 kb on + strand, within GFF3130 at 864.117 kb on + strand, within GFF3130 at 864.117 kb on + strand, within GFF3130 at 864.117 kb on + strand, within GFF3130 at 864.255 kb on - strand, within GFF3130 at 864.348 kb on + strand, within GFF3130 at 864.348 kb on + strand, within GFF3130 at 864.348 kb on + strand, within GFF3130 at 864.348 kb on + strand, within GFF3130 at 864.348 kb on + strand, within GFF3130 at 864.349 kb on - strand, within GFF3130
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 860,478 - -0.2 860,499 - +1.3 860,509 - +0.6 860,587 + +0.8 860,588 - +0.2 861,198 + GFF3129 0.20 +0.2 861,417 + GFF3129 0.28 +0.6 861,420 + GFF3129 0.28 +0.5 861,456 + GFF3129 0.29 -0.1 862,097 + GFF3129 0.51 -0.5 863,559 + -1.4 863,576 - -1.0 863,576 - +2.0 864,117 + GFF3130 0.15 +1.4 864,117 + GFF3130 0.15 +0.3 864,117 + GFF3130 0.15 +0.9 864,117 + GFF3130 0.15 +0.2 864,255 - GFF3130 0.21 +1.1 864,348 + GFF3130 0.24 +0.4 864,348 + GFF3130 0.24 -0.1 864,348 + GFF3130 0.24 -0.9 864,348 + GFF3130 0.24 +0.1 864,348 + GFF3130 0.24 +0.2 864,349 - GFF3130 0.24 -0.1
Or see this region's nucleotide sequence