Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3115 and GFF3116 overlap by 4 nucleotides GFF3116 and GFF3117 overlap by 4 nucleotides GFF3117 and GFF3118 are separated by 87 nucleotides GFF3118 and GFF3119 are separated by 140 nucleotides
GFF3115 - hypothetical protein, at 844,555 to 845,637
GFF3115
GFF3116 - hypothetical protein, at 845,634 to 846,245
GFF3116
GFF3117 - hypothetical protein, at 846,242 to 846,928
GFF3117
GFF3118 - hypothetical protein, at 847,016 to 847,693
GFF3118
GFF3119 - hypothetical protein, at 847,834 to 848,316
GFF3119
Position (kb) 846
847 Strain fitness (log2 ratio) -2
-1
0
1 at 845.414 kb on + strand, within GFF3115 at 845.414 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.431 kb on + strand, within GFF3115 at 845.432 kb on - strand, within GFF3115 at 845.432 kb on - strand, within GFF3115 at 845.432 kb on - strand, within GFF3115 at 845.505 kb on - strand, within GFF3115 at 846.043 kb on + strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.044 kb on - strand, within GFF3116 at 846.045 kb on + strand, within GFF3116 at 846.045 kb on + strand, within GFF3116 at 846.046 kb on - strand, within GFF3116 at 846.046 kb on - strand, within GFF3116 at 846.046 kb on - strand, within GFF3116 at 846.051 kb on - strand, within GFF3116 at 847.194 kb on - strand, within GFF3118 at 847.241 kb on - strand, within GFF3118 at 847.416 kb on - strand, within GFF3118 at 847.416 kb on - strand, within GFF3118 at 847.583 kb on + strand, within GFF3118 at 847.584 kb on - strand, within GFF3118 at 847.663 kb on + strand at 847.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 845,414 + GFF3115 0.79 -1.8 845,414 + GFF3115 0.79 -1.2 845,431 + GFF3115 0.81 +0.4 845,431 + GFF3115 0.81 -0.3 845,431 + GFF3115 0.81 -0.1 845,431 + GFF3115 0.81 +0.5 845,431 + GFF3115 0.81 +0.0 845,432 - GFF3115 0.81 -0.8 845,432 - GFF3115 0.81 +1.4 845,432 - GFF3115 0.81 -0.1 845,505 - GFF3115 0.88 -0.2 846,043 + GFF3116 0.67 -0.3 846,044 - GFF3116 0.67 -1.0 846,044 - GFF3116 0.67 +1.0 846,044 - GFF3116 0.67 +0.1 846,044 - GFF3116 0.67 +0.0 846,044 - GFF3116 0.67 -1.2 846,045 + GFF3116 0.67 +0.9 846,045 + GFF3116 0.67 +0.8 846,046 - GFF3116 0.67 -0.5 846,046 - GFF3116 0.67 +0.3 846,046 - GFF3116 0.67 +0.2 846,051 - GFF3116 0.68 -1.2 847,194 - GFF3118 0.26 +0.9 847,241 - GFF3118 0.33 +0.8 847,416 - GFF3118 0.59 +0.1 847,416 - GFF3118 0.59 +0.4 847,583 + GFF3118 0.84 -1.1 847,584 - GFF3118 0.84 -1.3 847,663 + +0.2 847,664 - +0.8
Or see this region's nucleotide sequence