Strain Fitness in Xanthobacter sp. DMC5 around GFF3100

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3099 and GFF3100 are separated by 72 nucleotidesGFF3100 and GFF3101 are separated by 365 nucleotidesGFF3101 and GFF3102 are separated by 10 nucleotides GFF3099 - Phosphoribosyl-AMP cyclohydrolase, at 828,918 to 829,415 GFF3099 GFF3100 - GTP cyclohydrolase 1, at 829,488 to 830,213 GFF3100 GFF3101 - hypothetical protein, at 830,579 to 831,022 GFF3101 GFF3102 - hypothetical protein, at 831,033 to 831,632 GFF3102 Position (kb) 829 830 831Strain fitness (log2 ratio) -1 0 1 2at 828.508 kb on + strandat 828.509 kb on - strandat 828.617 kb on + strandat 828.617 kb on + strandat 828.761 kb on + strandat 830.514 kb on - strandat 831.169 kb on + strand, within GFF3102at 831.169 kb on + strand, within GFF3102at 831.169 kb on + strand, within GFF3102at 831.170 kb on - strand, within GFF3102

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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828,508 + -1.2
828,509 - -0.5
828,617 + -0.4
828,617 + +1.5
828,761 + +1.9
830,514 - +2.1
831,169 + GFF3102 0.23 +1.1
831,169 + GFF3102 0.23 -0.5
831,169 + GFF3102 0.23 +0.2
831,170 - GFF3102 0.23 +0.4

Or see this region's nucleotide sequence