Strain Fitness in Xanthobacter sp. DMC5 around GFF3099

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3098 and GFF3099 are separated by 454 nucleotidesGFF3099 and GFF3100 are separated by 72 nucleotides GFF3098 - hypothetical protein, at 827,468 to 828,463 GFF3098 GFF3099 - Phosphoribosyl-AMP cyclohydrolase, at 828,918 to 829,415 GFF3099 GFF3100 - GTP cyclohydrolase 1, at 829,488 to 830,213 GFF3100 Position (kb) 828 829 830Strain fitness (log2 ratio) -1 0 1 2at 828.160 kb on - strand, within GFF3098at 828.192 kb on + strand, within GFF3098at 828.342 kb on - strand, within GFF3098at 828.508 kb on + strandat 828.509 kb on - strandat 828.617 kb on + strandat 828.617 kb on + strandat 828.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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828,160 - GFF3098 0.69 +0.9
828,192 + GFF3098 0.73 -0.3
828,342 - GFF3098 0.88 -0.3
828,508 + -1.2
828,509 - -0.5
828,617 + -0.4
828,617 + +1.5
828,761 + +1.9

Or see this region's nucleotide sequence