Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3093 and GFF3094 are separated by 104 nucleotides GFF3094 and GFF3095 are separated by 21 nucleotides GFF3095 and GFF3096 are separated by 57 nucleotides
GFF3093 - Peptidoglycan O-acetyltransferase, at 822,296 to 823,714
GFF3093
GFF3094 - hypothetical protein, at 823,819 to 824,916
GFF3094
GFF3095 - hypothetical protein, at 824,938 to 825,477
GFF3095
GFF3096 - hypothetical protein, at 825,535 to 826,173
GFF3096
Position (kb) 823
824
825 Strain fitness (log2 ratio) -1
0
1 at 823.172 kb on + strand, within GFF3093 at 823.713 kb on - strand at 824.416 kb on + strand, within GFF3094 at 825.098 kb on + strand, within GFF3095 at 825.098 kb on + strand, within GFF3095 at 825.098 kb on + strand, within GFF3095 at 825.098 kb on + strand, within GFF3095 at 825.099 kb on - strand, within GFF3095 at 825.099 kb on - strand, within GFF3095 at 825.099 kb on - strand, within GFF3095 at 825.099 kb on - strand, within GFF3095 at 825.144 kb on - strand, within GFF3095 at 825.617 kb on + strand, within GFF3096 at 825.618 kb on - strand, within GFF3096 at 825.779 kb on + strand, within GFF3096 at 825.779 kb on + strand, within GFF3096 at 825.779 kb on + strand, within GFF3096 at 825.780 kb on - strand, within GFF3096 at 825.780 kb on - strand, within GFF3096
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 823,172 + GFF3093 0.62 +0.4 823,713 - +0.5 824,416 + GFF3094 0.54 +0.4 825,098 + GFF3095 0.30 +0.8 825,098 + GFF3095 0.30 +0.1 825,098 + GFF3095 0.30 -1.1 825,098 + GFF3095 0.30 +0.3 825,099 - GFF3095 0.30 -0.2 825,099 - GFF3095 0.30 +0.1 825,099 - GFF3095 0.30 +1.4 825,099 - GFF3095 0.30 -0.2 825,144 - GFF3095 0.38 +0.6 825,617 + GFF3096 0.13 +0.2 825,618 - GFF3096 0.13 +0.4 825,779 + GFF3096 0.38 -0.6 825,779 + GFF3096 0.38 -0.3 825,779 + GFF3096 0.38 +0.5 825,780 - GFF3096 0.38 +0.0 825,780 - GFF3096 0.38 -0.2
Or see this region's nucleotide sequence