Strain Fitness in Xanthobacter sp. DMC5 around GFF3093

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3091 and GFF3092 are separated by 165 nucleotidesGFF3092 and GFF3093 are separated by 21 nucleotidesGFF3093 and GFF3094 are separated by 104 nucleotides GFF3091 - Divalent-cation tolerance protein CutA, at 821,012 to 821,332 GFF3091 GFF3092 - NAD kinase, at 821,498 to 822,274 GFF3092 GFF3093 - Peptidoglycan O-acetyltransferase, at 822,296 to 823,714 GFF3093 GFF3094 - hypothetical protein, at 823,819 to 824,916 GFF3094 Position (kb) 822 823 824Strain fitness (log2 ratio) -1 0 1at 821.314 kb on - strandat 821.391 kb on - strandat 821.391 kb on - strandat 822.326 kb on + strandat 822.326 kb on + strandat 823.172 kb on + strand, within GFF3093at 823.713 kb on - strandat 824.416 kb on + strand, within GFF3094

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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821,314 - +0.2
821,391 - -1.1
821,391 - +1.1
822,326 + +0.0
822,326 + -0.2
823,172 + GFF3093 0.62 +0.4
823,713 - +0.5
824,416 + GFF3094 0.54 +0.4

Or see this region's nucleotide sequence