Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3090 and GFF3091 are separated by 34 nucleotides GFF3091 and GFF3092 are separated by 165 nucleotides GFF3092 and GFF3093 are separated by 21 nucleotides
GFF3090 - hypothetical protein, at 819,946 to 820,977
GFF3090
GFF3091 - Divalent-cation tolerance protein CutA, at 821,012 to 821,332
GFF3091
GFF3092 - NAD kinase, at 821,498 to 822,274
GFF3092
GFF3093 - Peptidoglycan O-acetyltransferase, at 822,296 to 823,714
GFF3093
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 820.634 kb on - strand, within GFF3090 at 820.690 kb on - strand, within GFF3090 at 820.690 kb on - strand, within GFF3090 at 820.701 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.849 kb on + strand, within GFF3090 at 820.850 kb on - strand, within GFF3090 at 820.850 kb on - strand, within GFF3090 at 820.850 kb on - strand, within GFF3090 at 820.889 kb on - strand at 820.940 kb on - strand at 820.940 kb on - strand at 821.314 kb on - strand at 821.391 kb on - strand at 821.391 kb on - strand at 822.326 kb on + strand at 822.326 kb on + strand at 823.172 kb on + strand, within GFF3093
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 820,634 - GFF3090 0.67 +0.4 820,690 - GFF3090 0.72 +0.3 820,690 - GFF3090 0.72 +1.4 820,701 + GFF3090 0.73 -1.2 820,849 + GFF3090 0.88 +0.5 820,849 + GFF3090 0.88 +0.2 820,849 + GFF3090 0.88 -0.1 820,849 + GFF3090 0.88 -0.5 820,849 + GFF3090 0.88 +0.3 820,849 + GFF3090 0.88 -0.9 820,850 - GFF3090 0.88 -2.4 820,850 - GFF3090 0.88 +0.4 820,850 - GFF3090 0.88 +0.0 820,889 - -0.0 820,940 - +0.2 820,940 - -1.0 821,314 - +0.2 821,391 - -1.1 821,391 - +1.1 822,326 + +0.0 822,326 + -0.2 823,172 + GFF3093 0.62 +0.4
Or see this region's nucleotide sequence