Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3082 and GFF3083 are separated by 317 nucleotides GFF3083 and GFF3084 are separated by 32 nucleotides GFF3084 and GFF3085 are separated by 91 nucleotides GFF3085 and GFF3086 are separated by 88 nucleotides
GFF3082 - Putative NAD(P)H nitroreductase YdjA, at 812,480 to 813,055
GFF3082
GFF3083 - hypothetical protein, at 813,373 to 814,317
GFF3083
GFF3084 - hypothetical protein, at 814,350 to 814,685
GFF3084
GFF3085 - hypothetical protein, at 814,777 to 815,013
GFF3085
GFF3086 - hypothetical protein, at 815,102 to 815,395
GFF3086
Position (kb) 813
814
815 Strain fitness (log2 ratio) -2
-1
0
1 at 812.387 kb on + strand at 812.387 kb on + strand at 812.388 kb on - strand at 812.552 kb on - strand, within GFF3082 at 812.553 kb on + strand, within GFF3082 at 812.553 kb on - strand, within GFF3082 at 812.554 kb on - strand, within GFF3082 at 812.554 kb on - strand, within GFF3082 at 812.554 kb on - strand, within GFF3082 at 812.716 kb on - strand, within GFF3082 at 813.047 kb on - strand at 813.047 kb on - strand at 813.047 kb on - strand at 813.047 kb on - strand at 813.094 kb on + strand at 813.094 kb on + strand at 814.683 kb on + strand at 814.683 kb on + strand at 814.684 kb on - strand at 814.896 kb on - strand, within GFF3085 at 815.044 kb on + strand at 815.287 kb on - strand, within GFF3086
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 812,387 + +1.5 812,387 + -2.0 812,388 - -1.2 812,552 - GFF3082 0.12 +0.1 812,553 + GFF3082 0.13 +0.5 812,553 - GFF3082 0.13 -0.5 812,554 - GFF3082 0.13 -0.9 812,554 - GFF3082 0.13 -1.0 812,554 - GFF3082 0.13 +0.0 812,716 - GFF3082 0.41 -0.6 813,047 - +0.1 813,047 - +0.1 813,047 - +0.3 813,047 - +1.3 813,094 + -0.5 813,094 + -0.1 814,683 + -0.2 814,683 + +0.6 814,684 - +0.1 814,896 - GFF3085 0.50 +0.4 815,044 + -0.9 815,287 - GFF3086 0.63 +0.8
Or see this region's nucleotide sequence