Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3070 and GFF3071 are separated by 324 nucleotides GFF3071 and GFF3072 are separated by 170 nucleotides GFF3072 and GFF3073 are separated by 158 nucleotides GFF3073 and GFF3074 are separated by 170 nucleotides
GFF3070 - hypothetical protein, at 802,044 to 802,544
GFF3070
GFF3071 - 3-hydroxybenzoate 6-hydroxylase 1, at 802,869 to 804,056
GFF3071
GFF3072 - hypothetical protein, at 804,227 to 804,499
GFF3072
GFF3073 - hypothetical protein, at 804,658 to 804,759
GFF3073
GFF3074 - ATM1-type heavy metal exporter, at 804,930 to 806,729
GFF3074
Position (kb) 802
803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 802.019 kb on - strand at 802.184 kb on - strand, within GFF3070 at 802.186 kb on + strand, within GFF3070 at 802.187 kb on - strand, within GFF3070 at 802.698 kb on + strand at 802.699 kb on - strand at 804.310 kb on - strand, within GFF3072 at 804.310 kb on - strand, within GFF3072 at 804.417 kb on + strand, within GFF3072 at 804.526 kb on + strand at 804.527 kb on - strand at 804.651 kb on + strand at 804.651 kb on + strand at 804.652 kb on - strand at 804.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 802,019 - +1.4 802,184 - GFF3070 0.28 -3.0 802,186 + GFF3070 0.28 -3.0 802,187 - GFF3070 0.29 -0.0 802,698 + +0.0 802,699 - -0.1 804,310 - GFF3072 0.30 -0.1 804,310 - GFF3072 0.30 -0.2 804,417 + GFF3072 0.70 -1.5 804,526 + -1.0 804,527 - +0.8 804,651 + +0.0 804,651 + +0.9 804,652 - -0.0 804,980 - +0.7
Or see this region's nucleotide sequence