Strain Fitness in Xanthobacter sp. DMC5 around GFF3067

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3066 and GFF3067 are separated by 405 nucleotidesGFF3067 and GFF3068 are separated by 34 nucleotides GFF3066 - Phospho-2-dehydro-3-deoxyheptonate aldolase, at 797,102 to 798,538 GFF3066 GFF3067 - hypothetical protein, at 798,944 to 799,390 GFF3067 GFF3068 - hypothetical protein, at 799,425 to 800,510 GFF3068 Position (kb) 798 799 800Strain fitness (log2 ratio) -2 -1 0 1at 798.548 kb on + strandat 798.548 kb on + strandat 798.548 kb on + strandat 798.593 kb on - strandat 798.948 kb on - strandat 798.948 kb on - strandat 798.948 kb on - strandat 799.275 kb on - strand, within GFF3067at 799.388 kb on + strandat 799.690 kb on + strand, within GFF3068at 799.690 kb on + strand, within GFF3068at 799.691 kb on - strand, within GFF3068at 799.966 kb on + strand, within GFF3068at 800.158 kb on + strand, within GFF3068at 800.198 kb on - strand, within GFF3068

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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798,548 + -1.3
798,548 + +0.5
798,548 + -0.7
798,593 - -0.2
798,948 - -0.9
798,948 - +1.5
798,948 - -0.1
799,275 - GFF3067 0.74 -0.5
799,388 + -1.8
799,690 + GFF3068 0.24 -0.3
799,690 + GFF3068 0.24 +0.2
799,691 - GFF3068 0.24 +1.2
799,966 + GFF3068 0.50 +0.9
800,158 + GFF3068 0.67 -0.0
800,198 - GFF3068 0.71 +0.5

Or see this region's nucleotide sequence