Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3065 and GFF3066 are separated by 338 nucleotides GFF3066 and GFF3067 are separated by 405 nucleotides GFF3067 and GFF3068 are separated by 34 nucleotides
GFF3065 - Bicyclomycin resistance protein, at 795,474 to 796,763
GFF3065
GFF3066 - Phospho-2-dehydro-3-deoxyheptonate aldolase, at 797,102 to 798,538
GFF3066
GFF3067 - hypothetical protein, at 798,944 to 799,390
GFF3067
GFF3068 - hypothetical protein, at 799,425 to 800,510
GFF3068
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1 at 796.108 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.432 kb on + strand, within GFF3065 at 796.433 kb on - strand, within GFF3065 at 796.452 kb on + strand, within GFF3065 at 796.452 kb on + strand, within GFF3065 at 796.452 kb on + strand, within GFF3065 at 796.453 kb on - strand, within GFF3065 at 796.453 kb on - strand, within GFF3065 at 796.492 kb on + strand, within GFF3065 at 796.525 kb on + strand, within GFF3065 at 796.526 kb on - strand, within GFF3065 at 796.531 kb on + strand, within GFF3065 at 796.531 kb on + strand, within GFF3065 at 796.532 kb on - strand, within GFF3065 at 796.995 kb on + strand at 796.995 kb on + strand at 796.997 kb on + strand at 796.997 kb on + strand at 798.548 kb on + strand at 798.548 kb on + strand at 798.548 kb on + strand at 798.593 kb on - strand at 798.948 kb on - strand at 798.948 kb on - strand at 798.948 kb on - strand at 799.275 kb on - strand, within GFF3067 at 799.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 796,108 + GFF3065 0.49 +0.2 796,432 + GFF3065 0.74 -0.2 796,432 + GFF3065 0.74 -1.5 796,432 + GFF3065 0.74 +0.8 796,432 + GFF3065 0.74 +0.6 796,433 - GFF3065 0.74 +1.4 796,452 + GFF3065 0.76 -0.9 796,452 + GFF3065 0.76 +0.0 796,452 + GFF3065 0.76 +0.9 796,453 - GFF3065 0.76 +1.1 796,453 - GFF3065 0.76 -0.3 796,492 + GFF3065 0.79 +0.3 796,525 + GFF3065 0.81 +1.2 796,526 - GFF3065 0.82 -0.8 796,531 + GFF3065 0.82 -0.4 796,531 + GFF3065 0.82 -0.6 796,532 - GFF3065 0.82 +0.2 796,995 + -0.3 796,995 + -0.0 796,997 + -2.3 796,997 + +0.2 798,548 + -1.3 798,548 + +0.5 798,548 + -0.7 798,593 - -0.2 798,948 - -0.9 798,948 - +1.5 798,948 - -0.1 799,275 - GFF3067 0.74 -0.5 799,388 + -1.8
Or see this region's nucleotide sequence