Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3058 and GFF3059 are separated by 279 nucleotides GFF3059 and GFF3060 are separated by 139 nucleotides GFF3060 and GFF3061 are separated by 24 nucleotides GFF3061 and GFF3062 are separated by 241 nucleotides
GFF3058 - N-acetylmuramic acid 6-phosphate phosphatase, at 787,473 to 788,189
GFF3058
GFF3059 - hypothetical protein, at 788,469 to 788,936
GFF3059
GFF3060 - Ribose-5-phosphate isomerase A, at 789,076 to 789,783
GFF3060
GFF3061 - hypothetical protein, at 789,808 to 790,368
GFF3061
GFF3062 - hypothetical protein, at 790,610 to 792,724
GFF3062
Position (kb) 789
790 Strain fitness (log2 ratio) -2
-1
0
1 at 788.304 kb on - strand at 788.442 kb on - strand at 788.659 kb on - strand, within GFF3059 at 788.785 kb on - strand, within GFF3059 at 788.805 kb on + strand, within GFF3059 at 788.806 kb on - strand, within GFF3059 at 788.866 kb on - strand, within GFF3059 at 788.975 kb on - strand at 789.782 kb on - strand at 790.168 kb on + strand, within GFF3061 at 790.168 kb on + strand, within GFF3061 at 790.216 kb on + strand, within GFF3061 at 790.611 kb on + strand at 790.612 kb on - strand at 790.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 788,304 - +1.2 788,442 - +1.2 788,659 - GFF3059 0.41 -0.6 788,785 - GFF3059 0.68 -0.8 788,805 + GFF3059 0.72 -1.2 788,806 - GFF3059 0.72 -2.0 788,866 - GFF3059 0.85 +0.5 788,975 - -2.3 789,782 - -0.9 790,168 + GFF3061 0.64 +0.9 790,168 + GFF3061 0.64 +0.5 790,216 + GFF3061 0.73 -0.1 790,611 + -1.0 790,612 - -1.4 790,612 - -1.0
Or see this region's nucleotide sequence