Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3054 and GFF3055 are separated by 72 nucleotides GFF3055 and GFF3056 are separated by 148 nucleotides GFF3056 and GFF3057 are separated by 791 nucleotides
GFF3054 - hypothetical protein, at 784,677 to 784,988
GFF3054
GFF3055 - Protein YciF, at 785,061 to 785,567
GFF3055
GFF3056 - hypothetical protein, at 785,716 to 786,042
GFF3056
GFF3057 - hypothetical protein, at 786,834 to 787,049
GFF3057
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1 at 785.043 kb on - strand at 785.043 kb on - strand at 785.046 kb on + strand at 785.047 kb on - strand at 785.125 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.406 kb on + strand, within GFF3055 at 785.406 kb on + strand, within GFF3055 at 785.407 kb on - strand, within GFF3055 at 785.407 kb on - strand, within GFF3055 at 785.795 kb on + strand, within GFF3056 at 785.795 kb on + strand, within GFF3056 at 785.796 kb on - strand, within GFF3056 at 785.911 kb on + strand, within GFF3056 at 785.950 kb on + strand, within GFF3056 at 786.022 kb on + strand at 786.022 kb on + strand at 786.133 kb on - strand at 786.136 kb on - strand at 786.136 kb on - strand at 786.139 kb on + strand at 786.139 kb on + strand at 786.140 kb on - strand at 786.143 kb on + strand at 786.198 kb on + strand at 786.219 kb on - strand at 786.247 kb on - strand at 786.293 kb on - strand at 786.439 kb on + strand at 786.440 kb on - strand at 786.450 kb on - strand at 786.458 kb on - strand at 786.458 kb on - strand at 786.585 kb on - strand at 786.588 kb on + strand at 786.707 kb on + strand at 786.729 kb on + strand at 786.730 kb on - strand at 786.995 kb on + strand, within GFF3057
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 785,043 - -0.5 785,043 - -0.0 785,046 + +1.5 785,047 - +0.8 785,125 + GFF3055 0.13 +0.2 785,127 + GFF3055 0.13 -1.6 785,127 + GFF3055 0.13 -0.2 785,127 + GFF3055 0.13 -0.3 785,127 + GFF3055 0.13 -1.0 785,127 + GFF3055 0.13 +0.4 785,128 - GFF3055 0.13 -0.4 785,128 - GFF3055 0.13 -0.7 785,128 - GFF3055 0.13 -1.9 785,128 - GFF3055 0.13 +0.6 785,128 - GFF3055 0.13 +0.1 785,128 - GFF3055 0.13 +0.3 785,128 - GFF3055 0.13 -0.3 785,406 + GFF3055 0.68 -0.3 785,406 + GFF3055 0.68 -1.1 785,407 - GFF3055 0.68 -0.7 785,407 - GFF3055 0.68 -0.6 785,795 + GFF3056 0.24 -0.4 785,795 + GFF3056 0.24 +1.0 785,796 - GFF3056 0.24 +1.0 785,911 + GFF3056 0.60 -0.2 785,950 + GFF3056 0.72 -0.2 786,022 + -0.3 786,022 + +1.5 786,133 - -1.9 786,136 - +0.1 786,136 - -0.2 786,139 + +1.2 786,139 + +0.2 786,140 - -0.8 786,143 + +0.8 786,198 + -0.6 786,219 - +0.8 786,247 - +0.9 786,293 - -0.6 786,439 + +0.0 786,440 - -0.1 786,450 - -1.6 786,458 - +1.0 786,458 - -0.2 786,585 - +0.2 786,588 + +0.9 786,707 + +0.4 786,729 + +1.0 786,730 - +0.3 786,995 + GFF3057 0.75 +1.6
Or see this region's nucleotide sequence