Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3053 and GFF3054 are separated by 295 nucleotides GFF3054 and GFF3055 are separated by 72 nucleotides GFF3055 and GFF3056 are separated by 148 nucleotides
GFF3053 - hypothetical protein, at 783,068 to 784,381
GFF3053
GFF3054 - hypothetical protein, at 784,677 to 784,988
GFF3054
GFF3055 - Protein YciF, at 785,061 to 785,567
GFF3055
GFF3056 - hypothetical protein, at 785,716 to 786,042
GFF3056
Position (kb) 785
786 Strain fitness (log2 ratio) -2
-1
0
1 at 784.257 kb on - strand at 784.257 kb on - strand at 784.259 kb on - strand at 784.259 kb on - strand at 784.460 kb on + strand at 784.461 kb on - strand at 784.461 kb on - strand at 784.539 kb on + strand at 784.669 kb on - strand at 785.043 kb on - strand at 785.043 kb on - strand at 785.046 kb on + strand at 785.047 kb on - strand at 785.125 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.406 kb on + strand, within GFF3055 at 785.406 kb on + strand, within GFF3055 at 785.407 kb on - strand, within GFF3055 at 785.407 kb on - strand, within GFF3055 at 785.795 kb on + strand, within GFF3056 at 785.795 kb on + strand, within GFF3056 at 785.796 kb on - strand, within GFF3056 at 785.911 kb on + strand, within GFF3056 at 785.950 kb on + strand, within GFF3056 at 786.022 kb on + strand at 786.022 kb on + strand at 786.133 kb on - strand at 786.136 kb on - strand at 786.136 kb on - strand at 786.139 kb on + strand at 786.139 kb on + strand at 786.140 kb on - strand at 786.143 kb on + strand at 786.198 kb on + strand at 786.219 kb on - strand at 786.247 kb on - strand at 786.293 kb on - strand at 786.439 kb on + strand at 786.440 kb on - strand at 786.450 kb on - strand at 786.458 kb on - strand at 786.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 784,257 - +0.6 784,257 - +0.0 784,259 - -1.3 784,259 - -0.1 784,460 + +0.8 784,461 - +0.8 784,461 - +0.4 784,539 + +0.0 784,669 - -0.0 785,043 - -0.5 785,043 - -0.0 785,046 + +1.5 785,047 - +0.8 785,125 + GFF3055 0.13 +0.2 785,127 + GFF3055 0.13 -1.6 785,127 + GFF3055 0.13 -0.2 785,127 + GFF3055 0.13 -0.3 785,127 + GFF3055 0.13 -1.0 785,127 + GFF3055 0.13 +0.4 785,128 - GFF3055 0.13 -0.4 785,128 - GFF3055 0.13 -0.7 785,128 - GFF3055 0.13 -1.9 785,128 - GFF3055 0.13 +0.6 785,128 - GFF3055 0.13 +0.1 785,128 - GFF3055 0.13 +0.3 785,128 - GFF3055 0.13 -0.3 785,406 + GFF3055 0.68 -0.3 785,406 + GFF3055 0.68 -1.1 785,407 - GFF3055 0.68 -0.7 785,407 - GFF3055 0.68 -0.6 785,795 + GFF3056 0.24 -0.4 785,795 + GFF3056 0.24 +1.0 785,796 - GFF3056 0.24 +1.0 785,911 + GFF3056 0.60 -0.2 785,950 + GFF3056 0.72 -0.2 786,022 + -0.3 786,022 + +1.5 786,133 - -1.9 786,136 - +0.1 786,136 - -0.2 786,139 + +1.2 786,139 + +0.2 786,140 - -0.8 786,143 + +0.8 786,198 + -0.6 786,219 - +0.8 786,247 - +0.9 786,293 - -0.6 786,439 + +0.0 786,440 - -0.1 786,450 - -1.6 786,458 - +1.0 786,458 - -0.2
Or see this region's nucleotide sequence