Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3052 and GFF3053 are separated by 366 nucleotides GFF3053 and GFF3054 are separated by 295 nucleotides GFF3054 and GFF3055 are separated by 72 nucleotides
GFF3052 - AB hydrolase superfamily protein YdjP, at 781,841 to 782,701
GFF3052
GFF3053 - hypothetical protein, at 783,068 to 784,381
GFF3053
GFF3054 - hypothetical protein, at 784,677 to 784,988
GFF3054
GFF3055 - Protein YciF, at 785,061 to 785,567
GFF3055
Position (kb) 783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 782.076 kb on + strand, within GFF3052 at 782.077 kb on - strand, within GFF3052 at 782.370 kb on + strand, within GFF3052 at 782.370 kb on + strand, within GFF3052 at 782.509 kb on - strand, within GFF3052 at 782.738 kb on + strand at 782.738 kb on + strand at 782.739 kb on - strand at 782.761 kb on - strand at 782.761 kb on - strand at 783.007 kb on + strand at 783.377 kb on + strand, within GFF3053 at 783.378 kb on - strand, within GFF3053 at 783.378 kb on - strand, within GFF3053 at 783.422 kb on + strand, within GFF3053 at 783.423 kb on - strand, within GFF3053 at 783.423 kb on - strand, within GFF3053 at 783.423 kb on - strand, within GFF3053 at 783.674 kb on + strand, within GFF3053 at 783.675 kb on - strand, within GFF3053 at 783.896 kb on + strand, within GFF3053 at 783.897 kb on - strand, within GFF3053 at 784.011 kb on - strand, within GFF3053 at 784.257 kb on - strand at 784.257 kb on - strand at 784.259 kb on - strand at 784.259 kb on - strand at 784.460 kb on + strand at 784.461 kb on - strand at 784.461 kb on - strand at 784.539 kb on + strand at 784.669 kb on - strand at 785.043 kb on - strand at 785.043 kb on - strand at 785.046 kb on + strand at 785.047 kb on - strand at 785.125 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.127 kb on + strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055 at 785.128 kb on - strand, within GFF3055
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 782,076 + GFF3052 0.27 -2.1 782,077 - GFF3052 0.27 -3.1 782,370 + GFF3052 0.61 -2.2 782,370 + GFF3052 0.61 -2.5 782,509 - GFF3052 0.78 -1.4 782,738 + -0.0 782,738 + -0.1 782,739 - +0.3 782,761 - +0.7 782,761 - +1.6 783,007 + -0.8 783,377 + GFF3053 0.24 -0.4 783,378 - GFF3053 0.24 -0.1 783,378 - GFF3053 0.24 +0.4 783,422 + GFF3053 0.27 -0.6 783,423 - GFF3053 0.27 +0.8 783,423 - GFF3053 0.27 -1.0 783,423 - GFF3053 0.27 -0.8 783,674 + GFF3053 0.46 -1.0 783,675 - GFF3053 0.46 +0.9 783,896 + GFF3053 0.63 -0.6 783,897 - GFF3053 0.63 -0.6 784,011 - GFF3053 0.72 +0.5 784,257 - +0.6 784,257 - +0.0 784,259 - -1.3 784,259 - -0.1 784,460 + +0.8 784,461 - +0.8 784,461 - +0.4 784,539 + +0.0 784,669 - -0.0 785,043 - -0.5 785,043 - -0.0 785,046 + +1.5 785,047 - +0.8 785,125 + GFF3055 0.13 +0.2 785,127 + GFF3055 0.13 -1.6 785,127 + GFF3055 0.13 -0.2 785,127 + GFF3055 0.13 -0.3 785,127 + GFF3055 0.13 -1.0 785,127 + GFF3055 0.13 +0.4 785,128 - GFF3055 0.13 -0.4 785,128 - GFF3055 0.13 -0.7 785,128 - GFF3055 0.13 -1.9 785,128 - GFF3055 0.13 +0.6 785,128 - GFF3055 0.13 +0.1 785,128 - GFF3055 0.13 +0.3 785,128 - GFF3055 0.13 -0.3
Or see this region's nucleotide sequence