Strain Fitness in Xanthobacter sp. DMC5 around GFF3046

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3045 and GFF3046 are separated by 260 nucleotidesGFF3046 and GFF3047 are separated by 152 nucleotidesGFF3047 and GFF3048 are separated by 3 nucleotides GFF3045 - hypothetical protein, at 773,469 to 774,302 GFF3045 GFF3046 - hypothetical protein, at 774,563 to 777,526 GFF3046 GFF3047 - Bicarbonate transport ATP-binding protein CmpD, at 777,679 to 778,491 GFF3047 GFF3048 - Riboflavin transport system permease protein RibX, at 778,495 to 779,304 GFF3048 Position (kb) 774 775 776 777 778Strain fitness (log2 ratio) -1 0 1at 773.838 kb on - strand, within GFF3045at 774.338 kb on + strandat 774.339 kb on - strandat 774.339 kb on - strandat 774.339 kb on - strandat 774.371 kb on + strandat 774.519 kb on + strandat 774.519 kb on + strandat 777.503 kb on + strandat 778.314 kb on + strand, within GFF3047at 778.361 kb on + strand, within GFF3047at 778.362 kb on - strand, within GFF3047

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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773,838 - GFF3045 0.44 -0.5
774,338 + +0.8
774,339 - +1.4
774,339 - +0.1
774,339 - -0.6
774,371 + +0.9
774,519 + +0.0
774,519 + -0.2
777,503 + +0.4
778,314 + GFF3047 0.78 -0.2
778,361 + GFF3047 0.84 -0.5
778,362 - GFF3047 0.84 -0.7

Or see this region's nucleotide sequence