Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3043 and GFF3044 overlap by 4 nucleotides GFF3044 and GFF3045 overlap by 32 nucleotides
GFF3043 - Error-prone DNA polymerase, at 768,699 to 771,998
GFF3043
GFF3044 - Protein ImuB, at 771,995 to 773,500
GFF3044
GFF3045 - hypothetical protein, at 773,469 to 774,302
GFF3045
Position (kb) 771
772
773
774 Strain fitness (log2 ratio) -2
-1
0
1 at 771.145 kb on + strand, within GFF3043 at 771.146 kb on - strand, within GFF3043 at 771.146 kb on - strand, within GFF3043 at 771.362 kb on - strand, within GFF3043 at 771.362 kb on - strand, within GFF3043 at 771.837 kb on - strand at 771.838 kb on + strand at 771.839 kb on - strand at 771.863 kb on + strand at 771.864 kb on - strand at 771.982 kb on + strand at 772.047 kb on + strand at 772.048 kb on - strand at 772.048 kb on - strand at 772.048 kb on - strand at 772.048 kb on - strand at 772.063 kb on - strand at 772.105 kb on - strand at 772.105 kb on - strand at 772.399 kb on + strand, within GFF3044 at 772.399 kb on + strand, within GFF3044 at 772.399 kb on + strand, within GFF3044 at 772.400 kb on - strand, within GFF3044 at 772.400 kb on - strand, within GFF3044 at 772.418 kb on - strand, within GFF3044 at 772.833 kb on + strand, within GFF3044 at 772.834 kb on - strand, within GFF3044 at 772.981 kb on - strand, within GFF3044 at 772.981 kb on - strand, within GFF3044 at 772.981 kb on - strand, within GFF3044 at 773.348 kb on + strand, within GFF3044 at 773.838 kb on - strand, within GFF3045 at 774.338 kb on + strand at 774.339 kb on - strand at 774.339 kb on - strand at 774.339 kb on - strand at 774.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 771,145 + GFF3043 0.74 -0.6 771,146 - GFF3043 0.74 +0.5 771,146 - GFF3043 0.74 -0.0 771,362 - GFF3043 0.81 +0.9 771,362 - GFF3043 0.81 +0.7 771,837 - +0.3 771,838 + -0.2 771,839 - -0.5 771,863 + +1.6 771,864 - -0.2 771,982 + +0.5 772,047 + -0.8 772,048 - +1.1 772,048 - +0.4 772,048 - -0.1 772,048 - +0.9 772,063 - +0.1 772,105 - -0.8 772,105 - -0.1 772,399 + GFF3044 0.27 +0.3 772,399 + GFF3044 0.27 -0.2 772,399 + GFF3044 0.27 -0.6 772,400 - GFF3044 0.27 +0.2 772,400 - GFF3044 0.27 -1.3 772,418 - GFF3044 0.28 +0.3 772,833 + GFF3044 0.56 -0.7 772,834 - GFF3044 0.56 -0.9 772,981 - GFF3044 0.65 -1.2 772,981 - GFF3044 0.65 +0.4 772,981 - GFF3044 0.65 -2.1 773,348 + GFF3044 0.90 +0.0 773,838 - GFF3045 0.44 -0.5 774,338 + +0.8 774,339 - +1.4 774,339 - +0.1 774,339 - -0.6 774,371 + +0.9
Or see this region's nucleotide sequence