Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3038 and GFF3039 are separated by 246 nucleotides GFF3039 and GFF3040 are separated by 140 nucleotides
GFF3038 - Glutaminase, at 763,118 to 764,962
GFF3038
GFF3039 - hypothetical protein, at 765,209 to 765,466
GFF3039
GFF3040 - L-threonate dehydrogenase, at 765,607 to 766,545
GFF3040
Position (kb) 765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 764.209 kb on - strand, within GFF3038 at 764.253 kb on + strand, within GFF3038 at 764.253 kb on + strand, within GFF3038 at 764.254 kb on - strand, within GFF3038 at 764.364 kb on + strand, within GFF3038 at 764.365 kb on - strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.406 kb on + strand, within GFF3038 at 764.407 kb on - strand, within GFF3038 at 764.407 kb on - strand, within GFF3038 at 764.421 kb on + strand, within GFF3038 at 764.775 kb on + strand, within GFF3038 at 764.775 kb on + strand, within GFF3038 at 764.776 kb on - strand, within GFF3038 at 764.776 kb on - strand, within GFF3038 at 764.776 kb on - strand, within GFF3038 at 764.845 kb on + strand at 764.845 kb on + strand at 764.847 kb on + strand at 764.847 kb on + strand at 765.107 kb on + strand at 765.117 kb on - strand at 765.481 kb on + strand at 765.482 kb on - strand at 765.565 kb on + strand at 765.566 kb on - strand at 765.566 kb on - strand at 765.650 kb on + strand at 765.651 kb on - strand at 765.821 kb on + strand, within GFF3040 at 765.822 kb on - strand, within GFF3040 at 765.896 kb on + strand, within GFF3040 at 765.896 kb on + strand, within GFF3040 at 766.108 kb on - strand, within GFF3040 at 766.108 kb on - strand, within GFF3040 at 766.108 kb on - strand, within GFF3040 at 766.387 kb on + strand, within GFF3040
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 764,209 - GFF3038 0.59 -0.6 764,253 + GFF3038 0.62 -0.1 764,253 + GFF3038 0.62 +1.0 764,254 - GFF3038 0.62 -1.6 764,364 + GFF3038 0.68 +1.4 764,365 - GFF3038 0.68 -0.1 764,406 + GFF3038 0.70 +1.0 764,406 + GFF3038 0.70 +1.2 764,406 + GFF3038 0.70 +0.0 764,406 + GFF3038 0.70 -0.2 764,407 - GFF3038 0.70 +0.9 764,407 - GFF3038 0.70 +1.2 764,421 + GFF3038 0.71 +0.3 764,775 + GFF3038 0.90 -0.5 764,775 + GFF3038 0.90 +0.1 764,776 - GFF3038 0.90 +0.0 764,776 - GFF3038 0.90 +1.3 764,776 - GFF3038 0.90 +0.7 764,845 + -1.0 764,845 + +0.2 764,847 + +0.2 764,847 + -0.6 765,107 + -0.6 765,117 - -1.7 765,481 + -0.0 765,482 - -0.6 765,565 + +0.5 765,566 - +0.2 765,566 - -0.1 765,650 + -1.2 765,651 - +0.0 765,821 + GFF3040 0.23 +0.0 765,822 - GFF3040 0.23 +0.1 765,896 + GFF3040 0.31 +0.9 765,896 + GFF3040 0.31 -2.9 766,108 - GFF3040 0.53 -0.5 766,108 - GFF3040 0.53 -0.9 766,108 - GFF3040 0.53 +1.0 766,387 + GFF3040 0.83 -0.8
Or see this region's nucleotide sequence