Strain Fitness in Xanthobacter sp. DMC5 around GFF3012

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3010 and GFF3011 are separated by 9 nucleotidesGFF3011 and GFF3012 overlap by 1 nucleotidesGFF3012 and GFF3013 overlap by 8 nucleotidesGFF3013 and GFF3014 overlap by 8 nucleotides GFF3010 - hypothetical protein, at 736,022 to 736,180 GFF3010 GFF3011 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 736,190 to 737,011 GFF3011 GFF3012 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 737,011 to 737,727 GFF3012 GFF3013 - Sulfate/thiosulfate import ATP-binding protein CysA, at 737,720 to 738,463 GFF3013 GFF3014 - hypothetical protein, at 738,456 to 739,442 GFF3014 Position (kb) 737 738Strain fitness (log2 ratio) -1 0 1at 737.544 kb on - strand, within GFF3012at 737.733 kb on + strandat 737.733 kb on + strandat 737.734 kb on - strandat 737.734 kb on - strandat 737.841 kb on + strand, within GFF3013at 738.207 kb on + strand, within GFF3013at 738.207 kb on + strand, within GFF3013at 738.208 kb on - strand, within GFF3013

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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737,544 - GFF3012 0.74 -0.6
737,733 + -0.4
737,733 + -0.2
737,734 - +0.1
737,734 - -0.6
737,841 + GFF3013 0.16 -1.3
738,207 + GFF3013 0.65 +0.4
738,207 + GFF3013 0.65 +0.4
738,208 - GFF3013 0.66 +0.0

Or see this region's nucleotide sequence