Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3003 and GFF3004 are separated by 7 nucleotides GFF3004 and GFF3005 are separated by 113 nucleotides GFF3005 and GFF3006 are separated by 37 nucleotides GFF3006 and GFF3007 are separated by 3 nucleotides
GFF3002 - hypothetical protein, at 730,433 to 730,849
GFF3002
GFF3003 - hypothetical protein, at 730,846 to 731,253
GFF3003
GFF3004 - hypothetical protein, at 731,261 to 731,734
GFF3004
GFF3005 - Glycine cleavage system transcriptional activator, at 731,848 to 732,750
GFF3005
GFF3006 - hypothetical protein, at 732,788 to 733,207
GFF3006
GFF3007 - Short-chain-enoyl-CoA hydratase, at 733,211 to 734,032
GFF3007
Position (kb) 731
732
733 Strain fitness (log2 ratio) -2
-1
0
1 at 730.926 kb on - strand, within GFF3003 at 730.929 kb on - strand, within GFF3003 at 730.929 kb on - strand, within GFF3003 at 730.940 kb on + strand, within GFF3003 at 731.043 kb on - strand, within GFF3003 at 731.338 kb on - strand, within GFF3004 at 731.379 kb on + strand, within GFF3004 at 731.482 kb on + strand, within GFF3004 at 731.509 kb on + strand, within GFF3004 at 731.511 kb on + strand, within GFF3004 at 731.511 kb on + strand, within GFF3004 at 731.511 kb on + strand, within GFF3004 at 731.512 kb on - strand, within GFF3004 at 731.512 kb on - strand, within GFF3004 at 731.512 kb on - strand, within GFF3004 at 731.512 kb on - strand, within GFF3004 at 731.667 kb on + strand, within GFF3004 at 731.668 kb on - strand, within GFF3004 at 731.668 kb on - strand, within GFF3004 at 731.783 kb on - strand at 732.560 kb on - strand, within GFF3005 at 732.813 kb on - strand at 733.051 kb on - strand, within GFF3006 at 733.051 kb on - strand, within GFF3006 at 733.059 kb on + strand, within GFF3006 at 733.059 kb on + strand, within GFF3006 at 733.059 kb on + strand, within GFF3006 at 733.059 kb on + strand, within GFF3006 at 733.060 kb on - strand, within GFF3006 at 733.060 kb on - strand, within GFF3006 at 733.095 kb on + strand, within GFF3006 at 733.096 kb on - strand, within GFF3006 at 733.096 kb on - strand, within GFF3006 at 733.537 kb on - strand, within GFF3007
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 730,926 - GFF3003 0.20 +1.4 730,929 - GFF3003 0.20 -0.3 730,929 - GFF3003 0.20 +0.2 730,940 + GFF3003 0.23 -0.8 731,043 - GFF3003 0.48 -0.3 731,338 - GFF3004 0.16 -0.1 731,379 + GFF3004 0.25 -2.2 731,482 + GFF3004 0.47 -0.3 731,509 + GFF3004 0.52 +0.7 731,511 + GFF3004 0.53 +0.1 731,511 + GFF3004 0.53 -2.5 731,511 + GFF3004 0.53 +1.1 731,512 - GFF3004 0.53 +1.0 731,512 - GFF3004 0.53 +1.5 731,512 - GFF3004 0.53 -1.0 731,512 - GFF3004 0.53 -1.0 731,667 + GFF3004 0.86 +0.7 731,668 - GFF3004 0.86 +0.0 731,668 - GFF3004 0.86 +0.2 731,783 - +0.0 732,560 - GFF3005 0.79 +1.2 732,813 - -1.8 733,051 - GFF3006 0.63 -0.1 733,051 - GFF3006 0.63 -0.5 733,059 + GFF3006 0.65 +0.0 733,059 + GFF3006 0.65 +1.0 733,059 + GFF3006 0.65 -0.6 733,059 + GFF3006 0.65 +0.3 733,060 - GFF3006 0.65 +0.0 733,060 - GFF3006 0.65 -0.6 733,095 + GFF3006 0.73 +0.4 733,096 - GFF3006 0.73 -0.6 733,096 - GFF3006 0.73 -0.5 733,537 - GFF3007 0.40 -0.8
Or see this region's nucleotide sequence