Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2971 and GFF2972 are separated by 451 nucleotides GFF2972 and GFF2973 are separated by 9 nucleotides GFF2973 and GFF2974 overlap by 118 nucleotides
GFF2971 - Nitrilase, at 696,795 to 697,868
GFF2971
GFF2972 - ECF RNA polymerase sigma factor SigF, at 698,320 to 698,865
GFF2972
GFF2973 - Anti-sigma-F factor NrsF, at 698,875 to 699,510
GFF2973
GFF2974 - hypothetical protein, at 699,393 to 699,680
GFF2974
Position (kb) 698
699 Strain fitness (log2 ratio) -2
-1
0
1 at 697.453 kb on + strand, within GFF2971 at 697.453 kb on + strand, within GFF2971 at 697.454 kb on - strand, within GFF2971 at 697.454 kb on - strand, within GFF2971 at 697.460 kb on + strand, within GFF2971 at 697.460 kb on + strand, within GFF2971 at 697.520 kb on - strand, within GFF2971 at 697.856 kb on - strand at 697.856 kb on - strand at 697.856 kb on - strand at 697.901 kb on - strand at 697.968 kb on + strand at 697.969 kb on - strand at 697.987 kb on + strand at 697.987 kb on + strand at 697.988 kb on - strand at 697.988 kb on - strand at 698.169 kb on + strand at 698.275 kb on - strand at 698.275 kb on - strand at 698.315 kb on + strand at 698.316 kb on - strand at 698.316 kb on - strand at 698.387 kb on - strand, within GFF2972 at 699.245 kb on - strand, within GFF2973 at 699.254 kb on - strand, within GFF2973 at 699.254 kb on - strand, within GFF2973 at 699.254 kb on - strand, within GFF2973 at 699.394 kb on + strand at 699.395 kb on - strand at 699.442 kb on + strand at 699.612 kb on + strand, within GFF2974 at 699.636 kb on - strand, within GFF2974 at 699.658 kb on - strand at 699.672 kb on - strand at 699.695 kb on + strand at 699.696 kb on - strand at 699.748 kb on - strand at 699.818 kb on - strand at 699.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 697,453 + GFF2971 0.61 +0.4 697,453 + GFF2971 0.61 +0.8 697,454 - GFF2971 0.61 -0.8 697,454 - GFF2971 0.61 -1.6 697,460 + GFF2971 0.62 -0.5 697,460 + GFF2971 0.62 -0.1 697,520 - GFF2971 0.68 -0.5 697,856 - -0.5 697,856 - -0.8 697,856 - -0.9 697,901 - +0.3 697,968 + -1.6 697,969 - +0.6 697,987 + +0.1 697,987 + -1.7 697,988 - +0.4 697,988 - +0.3 698,169 + -0.0 698,275 - -2.3 698,275 - -0.0 698,315 + -0.0 698,316 - +0.4 698,316 - +0.1 698,387 - GFF2972 0.12 -0.2 699,245 - GFF2973 0.58 -2.0 699,254 - GFF2973 0.60 -0.2 699,254 - GFF2973 0.60 -0.6 699,254 - GFF2973 0.60 -1.8 699,394 + -1.2 699,395 - -2.6 699,442 + +0.4 699,612 + GFF2974 0.76 +0.5 699,636 - GFF2974 0.84 -0.2 699,658 - +0.3 699,672 - -0.4 699,695 + +0.3 699,696 - -0.2 699,748 - -1.0 699,818 - +0.5 699,865 - -1.0
Or see this region's nucleotide sequence