Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2970 and GFF2971 are separated by 78 nucleotides GFF2971 and GFF2972 are separated by 451 nucleotides
GFF2970 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 695,523 to 696,716
GFF2970
GFF2971 - Nitrilase, at 696,795 to 697,868
GFF2971
GFF2972 - ECF RNA polymerase sigma factor SigF, at 698,320 to 698,865
GFF2972
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 695.821 kb on + strand, within GFF2970 at 695.852 kb on - strand, within GFF2970 at 695.852 kb on - strand, within GFF2970 at 695.852 kb on - strand, within GFF2970 at 695.852 kb on - strand, within GFF2970 at 696.148 kb on + strand, within GFF2970 at 696.149 kb on - strand, within GFF2970 at 696.295 kb on + strand, within GFF2970 at 696.295 kb on + strand, within GFF2970 at 696.295 kb on + strand, within GFF2970 at 696.301 kb on - strand, within GFF2970 at 696.352 kb on + strand, within GFF2970 at 696.353 kb on - strand, within GFF2970 at 696.353 kb on - strand, within GFF2970 at 696.353 kb on - strand, within GFF2970 at 696.353 kb on - strand, within GFF2970 at 696.353 kb on - strand, within GFF2970 at 696.388 kb on + strand, within GFF2970 at 696.490 kb on + strand, within GFF2970 at 696.490 kb on + strand, within GFF2970 at 696.491 kb on - strand, within GFF2970 at 696.491 kb on - strand, within GFF2970 at 696.491 kb on - strand, within GFF2970 at 696.496 kb on + strand, within GFF2970 at 696.496 kb on + strand, within GFF2970 at 696.496 kb on + strand, within GFF2970 at 696.496 kb on + strand, within GFF2970 at 696.497 kb on - strand, within GFF2970 at 696.497 kb on - strand, within GFF2970 at 696.497 kb on - strand, within GFF2970 at 696.497 kb on - strand, within GFF2970 at 696.497 kb on - strand, within GFF2970 at 696.497 kb on - strand, within GFF2970 at 696.518 kb on + strand, within GFF2970 at 696.518 kb on + strand, within GFF2970 at 696.519 kb on - strand, within GFF2970 at 696.519 kb on - strand, within GFF2970 at 696.886 kb on + strand at 696.943 kb on + strand, within GFF2971 at 696.944 kb on - strand, within GFF2971 at 696.944 kb on - strand, within GFF2971 at 696.944 kb on - strand, within GFF2971 at 696.944 kb on - strand, within GFF2971 at 696.946 kb on + strand, within GFF2971 at 696.947 kb on - strand, within GFF2971 at 697.006 kb on + strand, within GFF2971 at 697.307 kb on + strand, within GFF2971 at 697.307 kb on + strand, within GFF2971 at 697.308 kb on - strand, within GFF2971 at 697.308 kb on - strand, within GFF2971 at 697.308 kb on - strand, within GFF2971 at 697.308 kb on - strand, within GFF2971 at 697.308 kb on - strand, within GFF2971 at 697.308 kb on - strand, within GFF2971 at 697.308 kb on - strand, within GFF2971 at 697.453 kb on + strand, within GFF2971 at 697.453 kb on + strand, within GFF2971 at 697.454 kb on - strand, within GFF2971 at 697.454 kb on - strand, within GFF2971 at 697.460 kb on + strand, within GFF2971 at 697.460 kb on + strand, within GFF2971 at 697.520 kb on - strand, within GFF2971 at 697.856 kb on - strand at 697.856 kb on - strand at 697.856 kb on - strand at 697.901 kb on - strand at 697.968 kb on + strand at 697.969 kb on - strand at 697.987 kb on + strand at 697.987 kb on + strand at 697.988 kb on - strand at 697.988 kb on - strand at 698.169 kb on + strand at 698.275 kb on - strand at 698.275 kb on - strand at 698.315 kb on + strand at 698.316 kb on - strand at 698.316 kb on - strand at 698.387 kb on - strand, within GFF2972
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 695,821 + GFF2970 0.25 -1.4 695,852 - GFF2970 0.28 +0.8 695,852 - GFF2970 0.28 +0.1 695,852 - GFF2970 0.28 -0.3 695,852 - GFF2970 0.28 +2.8 696,148 + GFF2970 0.52 +0.2 696,149 - GFF2970 0.52 +1.3 696,295 + GFF2970 0.65 +0.7 696,295 + GFF2970 0.65 +0.7 696,295 + GFF2970 0.65 -1.4 696,301 - GFF2970 0.65 +0.0 696,352 + GFF2970 0.69 -1.7 696,353 - GFF2970 0.70 +1.4 696,353 - GFF2970 0.70 +0.5 696,353 - GFF2970 0.70 -2.0 696,353 - GFF2970 0.70 +0.4 696,353 - GFF2970 0.70 -0.5 696,388 + GFF2970 0.72 -0.1 696,490 + GFF2970 0.81 +1.4 696,490 + GFF2970 0.81 +0.9 696,491 - GFF2970 0.81 -0.2 696,491 - GFF2970 0.81 -1.0 696,491 - GFF2970 0.81 +0.6 696,496 + GFF2970 0.81 -0.4 696,496 + GFF2970 0.81 -0.5 696,496 + GFF2970 0.81 -0.4 696,496 + GFF2970 0.81 -1.2 696,497 - GFF2970 0.82 -0.6 696,497 - GFF2970 0.82 -0.5 696,497 - GFF2970 0.82 -0.0 696,497 - GFF2970 0.82 -0.1 696,497 - GFF2970 0.82 -0.2 696,497 - GFF2970 0.82 -0.1 696,518 + GFF2970 0.83 -0.1 696,518 + GFF2970 0.83 -0.3 696,519 - GFF2970 0.83 +1.2 696,519 - GFF2970 0.83 -0.2 696,886 + +1.1 696,943 + GFF2971 0.14 -0.9 696,944 - GFF2971 0.14 -0.2 696,944 - GFF2971 0.14 +2.1 696,944 - GFF2971 0.14 +0.6 696,944 - GFF2971 0.14 +0.4 696,946 + GFF2971 0.14 -0.7 696,947 - GFF2971 0.14 +0.4 697,006 + GFF2971 0.20 -1.4 697,307 + GFF2971 0.48 -0.1 697,307 + GFF2971 0.48 -0.5 697,308 - GFF2971 0.48 -0.6 697,308 - GFF2971 0.48 -0.5 697,308 - GFF2971 0.48 -1.2 697,308 - GFF2971 0.48 -0.0 697,308 - GFF2971 0.48 +0.7 697,308 - GFF2971 0.48 +0.1 697,308 - GFF2971 0.48 +0.1 697,453 + GFF2971 0.61 +0.4 697,453 + GFF2971 0.61 +0.8 697,454 - GFF2971 0.61 -0.8 697,454 - GFF2971 0.61 -1.6 697,460 + GFF2971 0.62 -0.5 697,460 + GFF2971 0.62 -0.1 697,520 - GFF2971 0.68 -0.5 697,856 - -0.5 697,856 - -0.8 697,856 - -0.9 697,901 - +0.3 697,968 + -1.6 697,969 - +0.6 697,987 + +0.1 697,987 + -1.7 697,988 - +0.4 697,988 - +0.3 698,169 + -0.0 698,275 - -2.3 698,275 - -0.0 698,315 + -0.0 698,316 - +0.4 698,316 - +0.1 698,387 - GFF2972 0.12 -0.2
Or see this region's nucleotide sequence