Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2960 and GFF2961 are separated by 25 nucleotides GFF2961 and GFF2962 overlap by 14 nucleotides
GFF2960 - Transcriptional repressor IclR, at 684,902 to 685,756
GFF2960
GFF2961 - hypothetical protein, at 685,782 to 687,194
GFF2961
GFF2962 - hypothetical protein, at 687,181 to 688,086
GFF2962
Position (kb) 685
686
687
688 Strain fitness (log2 ratio) -1
0
1
2 at 685.520 kb on + strand, within GFF2960 at 685.521 kb on - strand, within GFF2960 at 686.013 kb on - strand, within GFF2961 at 686.013 kb on - strand, within GFF2961 at 686.058 kb on + strand, within GFF2961 at 686.058 kb on + strand, within GFF2961 at 686.059 kb on - strand, within GFF2961 at 686.163 kb on + strand, within GFF2961 at 686.163 kb on + strand, within GFF2961 at 686.836 kb on - strand, within GFF2961 at 687.010 kb on - strand, within GFF2961 at 687.010 kb on - strand, within GFF2961 at 687.079 kb on - strand at 687.079 kb on - strand at 687.103 kb on + strand at 687.103 kb on + strand at 687.380 kb on + strand, within GFF2962 at 687.381 kb on - strand, within GFF2962 at 687.381 kb on - strand, within GFF2962 at 687.381 kb on - strand, within GFF2962 at 687.381 kb on - strand, within GFF2962 at 687.480 kb on - strand, within GFF2962 at 687.698 kb on + strand, within GFF2962 at 687.698 kb on + strand, within GFF2962 at 687.699 kb on - strand, within GFF2962 at 688.153 kb on + strand at 688.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 685,520 + GFF2960 0.72 +1.0 685,521 - GFF2960 0.72 +0.8 686,013 - GFF2961 0.16 -1.0 686,013 - GFF2961 0.16 +0.3 686,058 + GFF2961 0.20 +0.3 686,058 + GFF2961 0.20 -0.0 686,059 - GFF2961 0.20 +1.4 686,163 + GFF2961 0.27 +0.5 686,163 + GFF2961 0.27 -0.3 686,836 - GFF2961 0.75 -0.0 687,010 - GFF2961 0.87 -0.7 687,010 - GFF2961 0.87 -0.0 687,079 - +0.2 687,079 - -0.8 687,103 + +0.2 687,103 + -0.2 687,380 + GFF2962 0.22 -0.5 687,381 - GFF2962 0.22 +0.1 687,381 - GFF2962 0.22 -0.4 687,381 - GFF2962 0.22 -0.1 687,381 - GFF2962 0.22 -0.7 687,480 - GFF2962 0.33 -0.5 687,698 + GFF2962 0.57 +0.2 687,698 + GFF2962 0.57 -0.7 687,699 - GFF2962 0.57 -1.2 688,153 + +0.1 688,154 - +1.8
Or see this region's nucleotide sequence