Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2956 and GFF2957 are separated by 11 nucleotides GFF2957 and GFF2958 overlap by 4 nucleotides GFF2958 and GFF2959 are separated by 12 nucleotides
GFF2956 - Riboflavin transport system permease protein RibX, at 681,103 to 681,927
GFF2956
GFF2957 - Ureidoglycolate lyase, at 681,939 to 682,778
GFF2957
GFF2958 - hypothetical protein, at 682,775 to 683,551
GFF2958
GFF2959 - hypothetical protein, at 683,564 to 684,607
GFF2959
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.946 kb on - strand at 681.070 kb on + strand at 681.071 kb on - strand at 681.104 kb on + strand at 681.105 kb on - strand at 681.270 kb on - strand, within GFF2956 at 681.270 kb on - strand, within GFF2956 at 681.606 kb on - strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.699 kb on - strand, within GFF2956 at 681.782 kb on + strand, within GFF2956 at 681.783 kb on - strand, within GFF2956 at 681.783 kb on - strand, within GFF2956 at 682.009 kb on + strand at 682.099 kb on + strand, within GFF2957 at 682.100 kb on - strand, within GFF2957 at 682.100 kb on - strand, within GFF2957 at 682.328 kb on - strand, within GFF2957 at 682.537 kb on + strand, within GFF2957 at 682.538 kb on - strand, within GFF2957 at 682.879 kb on - strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.983 kb on + strand, within GFF2958 at 682.984 kb on - strand, within GFF2958 at 682.984 kb on - strand, within GFF2958 at 682.984 kb on - strand, within GFF2958 at 683.011 kb on - strand, within GFF2958 at 683.061 kb on + strand, within GFF2958 at 683.062 kb on - strand, within GFF2958 at 683.062 kb on - strand, within GFF2958 at 683.062 kb on - strand, within GFF2958 at 683.144 kb on - strand, within GFF2958 at 683.170 kb on - strand, within GFF2958 at 683.178 kb on + strand, within GFF2958 at 683.292 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.331 kb on + strand, within GFF2958 at 683.332 kb on - strand, within GFF2958 at 683.332 kb on - strand, within GFF2958 at 683.589 kb on + strand at 683.607 kb on + strand at 683.607 kb on + strand at 683.608 kb on - strand at 683.700 kb on + strand, within GFF2959 at 683.701 kb on - strand, within GFF2959 at 683.701 kb on - strand, within GFF2959
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 680,946 - +0.7 681,070 + +0.2 681,071 - -1.2 681,104 + +0.6 681,105 - -0.1 681,270 - GFF2956 0.20 -0.9 681,270 - GFF2956 0.20 +0.0 681,606 - GFF2956 0.61 +0.1 681,611 + GFF2956 0.62 -0.5 681,611 + GFF2956 0.62 -1.0 681,611 + GFF2956 0.62 +1.2 681,611 + GFF2956 0.62 -0.8 681,611 + GFF2956 0.62 -0.9 681,611 + GFF2956 0.62 +0.8 681,611 + GFF2956 0.62 +0.6 681,611 + GFF2956 0.62 +0.4 681,612 - GFF2956 0.62 -0.4 681,612 - GFF2956 0.62 +0.3 681,612 - GFF2956 0.62 +0.6 681,612 - GFF2956 0.62 +0.0 681,699 - GFF2956 0.72 -2.2 681,782 + GFF2956 0.82 +1.0 681,783 - GFF2956 0.82 -0.8 681,783 - GFF2956 0.82 +0.1 682,009 + -0.7 682,099 + GFF2957 0.19 -1.1 682,100 - GFF2957 0.19 +0.5 682,100 - GFF2957 0.19 +0.1 682,328 - GFF2957 0.46 +0.5 682,537 + GFF2957 0.71 -0.0 682,538 - GFF2957 0.71 -0.3 682,879 - GFF2958 0.13 -1.2 682,983 + GFF2958 0.27 -0.3 682,983 + GFF2958 0.27 -0.3 682,983 + GFF2958 0.27 +0.2 682,983 + GFF2958 0.27 -1.1 682,984 - GFF2958 0.27 +1.0 682,984 - GFF2958 0.27 +0.1 682,984 - GFF2958 0.27 +0.2 683,011 - GFF2958 0.30 -0.8 683,061 + GFF2958 0.37 -1.0 683,062 - GFF2958 0.37 -1.4 683,062 - GFF2958 0.37 -0.8 683,062 - GFF2958 0.37 -1.4 683,144 - GFF2958 0.47 +2.2 683,170 - GFF2958 0.51 -1.6 683,178 + GFF2958 0.52 +0.2 683,292 + GFF2958 0.67 +0.3 683,331 + GFF2958 0.72 +1.8 683,331 + GFF2958 0.72 -0.3 683,331 + GFF2958 0.72 -0.4 683,331 + GFF2958 0.72 -0.8 683,331 + GFF2958 0.72 +2.3 683,332 - GFF2958 0.72 -1.8 683,332 - GFF2958 0.72 -0.7 683,589 + -0.3 683,607 + +0.1 683,607 + -1.2 683,608 - -0.8 683,700 + GFF2959 0.13 -0.0 683,701 - GFF2959 0.13 +0.2 683,701 - GFF2959 0.13 +1.3
Or see this region's nucleotide sequence