Strain Fitness in Xanthobacter sp. DMC5 around GFF2948

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2947 and GFF2948 are separated by 255 nucleotidesGFF2948 and GFF2949 are separated by 408 nucleotides GFF2947 - D-aminopeptidase, at 669,332 to 670,927 GFF2947 GFF2948 - Sensor histidine kinase RcsC, at 671,183 to 673,495 GFF2948 GFF2949 - 3-dehydroquinate synthase, at 673,904 to 675,694 GFF2949 Position (kb) 671 672 673 674Strain fitness (log2 ratio) -1 0 1at 670.219 kb on - strand, within GFF2947at 670.219 kb on - strand, within GFF2947at 670.305 kb on + strand, within GFF2947at 670.306 kb on - strand, within GFF2947at 670.311 kb on + strand, within GFF2947at 670.312 kb on - strand, within GFF2947at 670.312 kb on - strand, within GFF2947at 670.431 kb on + strand, within GFF2947at 670.976 kb on - strandat 670.981 kb on + strandat 671.141 kb on + strandat 673.766 kb on + strandat 673.766 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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670,219 - GFF2947 0.56 +0.1
670,219 - GFF2947 0.56 -0.6
670,305 + GFF2947 0.61 -1.6
670,306 - GFF2947 0.61 -0.8
670,311 + GFF2947 0.61 -0.4
670,312 - GFF2947 0.61 -0.2
670,312 - GFF2947 0.61 -0.0
670,431 + GFF2947 0.69 -0.4
670,976 - +0.3
670,981 + -0.1
671,141 + -0.0
673,766 + -0.9
673,766 + -0.6

Or see this region's nucleotide sequence