Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2940 and GFF2941 overlap by 1 nucleotides GFF2941 and GFF2942 overlap by 4 nucleotides GFF2942 and GFF2943 are separated by 174 nucleotides
GFF2940 - Multidrug resistance protein MdtC, at 660,697 to 663,828
GFF2940
GFF2941 - hypothetical protein, at 663,828 to 665,177
GFF2941
GFF2942 - putative HTH-type transcriptional regulator YfiR, at 665,174 to 665,824
GFF2942
GFF2943 - hypothetical protein, at 665,999 to 666,466
GFF2943
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -1
0
1
2 at 662.838 kb on - strand, within GFF2940 at 662.937 kb on - strand, within GFF2940 at 663.135 kb on + strand, within GFF2940 at 663.136 kb on - strand, within GFF2940 at 663.136 kb on - strand, within GFF2940 at 663.401 kb on + strand, within GFF2940 at 663.402 kb on - strand, within GFF2940 at 663.402 kb on - strand, within GFF2940 at 663.402 kb on - strand, within GFF2940 at 663.912 kb on + strand at 664.021 kb on + strand, within GFF2941 at 664.021 kb on + strand, within GFF2941 at 664.021 kb on + strand, within GFF2941 at 664.021 kb on + strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.022 kb on - strand, within GFF2941 at 664.106 kb on - strand, within GFF2941 at 664.106 kb on - strand, within GFF2941 at 664.801 kb on + strand, within GFF2941 at 664.802 kb on - strand, within GFF2941 at 664.881 kb on - strand, within GFF2941 at 665.491 kb on + strand, within GFF2942 at 665.492 kb on - strand, within GFF2942 at 665.637 kb on + strand, within GFF2942 at 665.637 kb on + strand, within GFF2942 at 665.849 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 662,838 - GFF2940 0.68 +0.6 662,937 - GFF2940 0.72 -0.2 663,135 + GFF2940 0.78 -0.2 663,136 - GFF2940 0.78 +0.6 663,136 - GFF2940 0.78 +0.0 663,401 + GFF2940 0.86 -0.5 663,402 - GFF2940 0.86 -0.2 663,402 - GFF2940 0.86 +0.5 663,402 - GFF2940 0.86 -0.8 663,912 + +1.8 664,021 + GFF2941 0.14 +0.5 664,021 + GFF2941 0.14 -0.8 664,021 + GFF2941 0.14 -0.7 664,021 + GFF2941 0.14 -0.3 664,022 - GFF2941 0.14 +0.8 664,022 - GFF2941 0.14 +0.7 664,022 - GFF2941 0.14 -0.5 664,022 - GFF2941 0.14 +0.4 664,106 - GFF2941 0.21 +1.9 664,106 - GFF2941 0.21 -0.4 664,801 + GFF2941 0.72 +0.4 664,802 - GFF2941 0.72 +0.1 664,881 - GFF2941 0.78 +1.6 665,491 + GFF2942 0.49 -0.2 665,492 - GFF2942 0.49 -1.2 665,637 + GFF2942 0.71 +0.8 665,637 + GFF2942 0.71 +0.1 665,849 + +0.6
Or see this region's nucleotide sequence