Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2937 and GFF2938 are separated by 288 nucleotides GFF2938 and GFF2939 overlap by 1 nucleotides GFF2939 and GFF2940 are separated by 119 nucleotides
GFF2937 - Methionine import ATP-binding protein MetN, at 658,131 to 659,261
GFF2937
GFF2938 - putative HTH-type transcriptional regulator YxaF, at 659,550 to 660,113
GFF2938
GFF2939 - hypothetical protein, at 660,113 to 660,577
GFF2939
GFF2940 - Multidrug resistance protein MdtC, at 660,697 to 663,828
GFF2940
Position (kb) 660
661 Strain fitness (log2 ratio) -2
-1
0
1 at 659.833 kb on + strand, within GFF2938 at 659.834 kb on - strand, within GFF2938 at 659.984 kb on - strand, within GFF2938 at 660.044 kb on - strand, within GFF2938 at 660.271 kb on - strand, within GFF2939 at 660.309 kb on + strand, within GFF2939 at 660.309 kb on + strand, within GFF2939 at 660.369 kb on + strand, within GFF2939 at 660.370 kb on - strand, within GFF2939 at 660.370 kb on - strand, within GFF2939 at 660.469 kb on - strand, within GFF2939 at 660.698 kb on + strand at 660.699 kb on - strand at 660.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 659,833 + GFF2938 0.50 -0.8 659,834 - GFF2938 0.50 +0.7 659,984 - GFF2938 0.77 +1.1 660,044 - GFF2938 0.88 +0.1 660,271 - GFF2939 0.34 -0.5 660,309 + GFF2939 0.42 +1.3 660,309 + GFF2939 0.42 -2.1 660,369 + GFF2939 0.55 -1.0 660,370 - GFF2939 0.55 -0.7 660,370 - GFF2939 0.55 -0.7 660,469 - GFF2939 0.77 -0.2 660,698 + -0.4 660,699 - -0.3 660,699 - -0.1
Or see this region's nucleotide sequence