Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2935 and GFF2936 are separated by 44 nucleotides GFF2936 and GFF2937 overlap by 8 nucleotides GFF2937 and GFF2938 are separated by 288 nucleotides GFF2938 and GFF2939 overlap by 1 nucleotides
GFF2935 - D-methionine-binding lipoprotein MetQ, at 656,628 to 657,407
GFF2935
GFF2936 - D-methionine transport system permease protein MetI, at 657,452 to 658,138
GFF2936
GFF2937 - Methionine import ATP-binding protein MetN, at 658,131 to 659,261
GFF2937
GFF2938 - putative HTH-type transcriptional regulator YxaF, at 659,550 to 660,113
GFF2938
GFF2939 - hypothetical protein, at 660,113 to 660,577
GFF2939
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 657.166 kb on + strand, within GFF2935 at 657.166 kb on + strand, within GFF2935 at 657.232 kb on + strand, within GFF2935 at 657.233 kb on - strand, within GFF2935 at 657.233 kb on - strand, within GFF2935 at 657.233 kb on - strand, within GFF2935 at 657.296 kb on - strand, within GFF2935 at 658.062 kb on + strand, within GFF2936 at 658.062 kb on + strand, within GFF2936 at 658.063 kb on - strand, within GFF2936 at 658.139 kb on - strand at 658.281 kb on - strand, within GFF2937 at 658.315 kb on - strand, within GFF2937 at 658.489 kb on + strand, within GFF2937 at 658.961 kb on + strand, within GFF2937 at 659.833 kb on + strand, within GFF2938 at 659.834 kb on - strand, within GFF2938 at 659.984 kb on - strand, within GFF2938 at 660.044 kb on - strand, within GFF2938
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 657,166 + GFF2935 0.69 -2.0 657,166 + GFF2935 0.69 +1.3 657,232 + GFF2935 0.77 +0.3 657,233 - GFF2935 0.78 -0.7 657,233 - GFF2935 0.78 +0.3 657,233 - GFF2935 0.78 +0.2 657,296 - GFF2935 0.86 +0.3 658,062 + GFF2936 0.89 -0.5 658,062 + GFF2936 0.89 -0.1 658,063 - GFF2936 0.89 +0.7 658,139 - +2.0 658,281 - GFF2937 0.13 -0.2 658,315 - GFF2937 0.16 +0.5 658,489 + GFF2937 0.32 +0.5 658,961 + GFF2937 0.73 -0.4 659,833 + GFF2938 0.50 -0.8 659,834 - GFF2938 0.50 +0.7 659,984 - GFF2938 0.77 +1.1 660,044 - GFF2938 0.88 +0.1
Or see this region's nucleotide sequence