Strain Fitness in Xanthobacter sp. DMC5 around GFF2924

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2923 and GFF2924 are separated by 353 nucleotidesGFF2924 and GFF2925 are separated by 8 nucleotidesGFF2925 and GFF2926 overlap by 1 nucleotides GFF2923 - hypothetical protein, at 642,613 to 643,668 GFF2923 GFF2924 - Sarcosine oxidase subunit beta, at 644,022 to 645,275 GFF2924 GFF2925 - Sarcosine oxidase subunit delta, at 645,284 to 645,571 GFF2925 GFF2926 - Sarcosine oxidase subunit alpha, at 645,571 to 648,576 GFF2926 Position (kb) 644 645 646Strain fitness (log2 ratio) -2 -1 0 1at 643.109 kb on + strand, within GFF2923at 643.110 kb on - strand, within GFF2923at 643.110 kb on - strand, within GFF2923at 643.110 kb on - strand, within GFF2923at 643.110 kb on - strand, within GFF2923at 643.533 kb on + strand, within GFF2923at 643.533 kb on + strand, within GFF2923at 643.534 kb on - strand, within GFF2923at 643.534 kb on - strand, within GFF2923at 643.534 kb on - strand, within GFF2923at 643.534 kb on - strand, within GFF2923at 643.534 kb on - strand, within GFF2923at 643.534 kb on - strand, within GFF2923at 643.535 kb on + strand, within GFF2923at 643.536 kb on - strand, within GFF2923at 643.536 kb on - strand, within GFF2923at 643.778 kb on + strandat 643.778 kb on + strandat 643.805 kb on + strandat 643.806 kb on - strandat 643.806 kb on - strandat 644.119 kb on - strandat 644.167 kb on - strand, within GFF2924at 644.167 kb on - strand, within GFF2924at 644.167 kb on - strand, within GFF2924at 644.169 kb on + strand, within GFF2924at 644.169 kb on + strand, within GFF2924at 644.169 kb on + strand, within GFF2924at 644.169 kb on + strand, within GFF2924at 644.277 kb on + strand, within GFF2924at 644.277 kb on + strand, within GFF2924at 644.277 kb on + strand, within GFF2924at 644.278 kb on - strand, within GFF2924at 644.278 kb on - strand, within GFF2924at 644.346 kb on + strand, within GFF2924at 644.346 kb on + strand, within GFF2924at 644.347 kb on - strand, within GFF2924at 644.347 kb on - strand, within GFF2924at 644.347 kb on - strand, within GFF2924at 644.347 kb on - strand, within GFF2924at 644.427 kb on + strand, within GFF2924at 644.744 kb on + strand, within GFF2924at 644.744 kb on + strand, within GFF2924at 644.744 kb on + strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.745 kb on - strand, within GFF2924at 644.871 kb on + strand, within GFF2924at 644.872 kb on - strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.925 kb on + strand, within GFF2924at 644.926 kb on - strand, within GFF2924at 644.926 kb on - strand, within GFF2924at 644.934 kb on + strand, within GFF2924at 644.935 kb on - strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.099 kb on + strand, within GFF2924at 645.100 kb on - strand, within GFF2924at 645.100 kb on - strand, within GFF2924at 645.306 kb on - strandat 645.407 kb on + strand, within GFF2925at 645.407 kb on + strand, within GFF2925at 645.408 kb on - strand, within GFF2925at 645.408 kb on - strand, within GFF2925at 645.527 kb on + strand, within GFF2925at 645.527 kb on + strand, within GFF2925at 645.528 kb on - strand, within GFF2925at 645.661 kb on + strandat 645.662 kb on - strandat 645.662 kb on - strandat 645.730 kb on + strandat 645.730 kb on + strandat 645.731 kb on - strandat 645.949 kb on + strand, within GFF2926at 645.950 kb on - strand, within GFF2926at 645.953 kb on - strand, within GFF2926at 645.953 kb on - strand, within GFF2926at 645.953 kb on - strand, within GFF2926at 645.994 kb on + strand, within GFF2926at 645.994 kb on + strand, within GFF2926at 645.994 kb on + strand, within GFF2926at 646.060 kb on + strand, within GFF2926at 646.061 kb on - strand, within GFF2926at 646.216 kb on - strand, within GFF2926at 646.216 kb on - strand, within GFF2926

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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643,109 + GFF2923 0.47 +0.2
643,110 - GFF2923 0.47 +1.3
643,110 - GFF2923 0.47 -1.2
643,110 - GFF2923 0.47 -0.8
643,110 - GFF2923 0.47 -0.7
643,533 + GFF2923 0.87 +1.1
643,533 + GFF2923 0.87 +0.2
643,534 - GFF2923 0.87 +0.3
643,534 - GFF2923 0.87 +1.0
643,534 - GFF2923 0.87 +1.1
643,534 - GFF2923 0.87 +0.3
643,534 - GFF2923 0.87 -0.5
643,534 - GFF2923 0.87 -0.1
643,535 + GFF2923 0.87 -0.1
643,536 - GFF2923 0.87 +0.7
643,536 - GFF2923 0.87 +0.0
643,778 + -0.3
643,778 + -0.7
643,805 + -1.3
643,806 - -0.6
643,806 - -0.3
644,119 - -0.7
644,167 - GFF2924 0.12 -1.0
644,167 - GFF2924 0.12 -0.7
644,167 - GFF2924 0.12 +0.0
644,169 + GFF2924 0.12 -0.6
644,169 + GFF2924 0.12 -0.5
644,169 + GFF2924 0.12 +0.3
644,169 + GFF2924 0.12 +0.4
644,277 + GFF2924 0.20 +0.0
644,277 + GFF2924 0.20 +0.3
644,277 + GFF2924 0.20 +0.0
644,278 - GFF2924 0.20 +0.7
644,278 - GFF2924 0.20 -1.4
644,346 + GFF2924 0.26 -0.1
644,346 + GFF2924 0.26 -0.1
644,347 - GFF2924 0.26 +0.5
644,347 - GFF2924 0.26 +1.6
644,347 - GFF2924 0.26 +0.1
644,347 - GFF2924 0.26 -0.2
644,427 + GFF2924 0.32 -0.3
644,744 + GFF2924 0.58 +0.3
644,744 + GFF2924 0.58 +0.1
644,744 + GFF2924 0.58 +0.5
644,745 - GFF2924 0.58 -1.1
644,745 - GFF2924 0.58 -0.3
644,745 - GFF2924 0.58 +1.0
644,745 - GFF2924 0.58 +0.5
644,871 + GFF2924 0.68 +1.1
644,872 - GFF2924 0.68 -0.8
644,925 + GFF2924 0.72 -0.6
644,925 + GFF2924 0.72 -0.3
644,925 + GFF2924 0.72 +0.2
644,925 + GFF2924 0.72 -0.2
644,926 - GFF2924 0.72 +0.8
644,926 - GFF2924 0.72 -0.7
644,934 + GFF2924 0.73 +0.5
644,935 - GFF2924 0.73 +0.4
645,099 + GFF2924 0.86 -0.3
645,099 + GFF2924 0.86 +0.6
645,099 + GFF2924 0.86 -0.6
645,099 + GFF2924 0.86 -0.1
645,100 - GFF2924 0.86 +1.2
645,100 - GFF2924 0.86 +1.0
645,306 - -0.6
645,407 + GFF2925 0.43 -0.8
645,407 + GFF2925 0.43 -0.5
645,408 - GFF2925 0.43 -0.4
645,408 - GFF2925 0.43 +0.7
645,527 + GFF2925 0.84 +0.3
645,527 + GFF2925 0.84 +1.1
645,528 - GFF2925 0.85 -0.5
645,661 + -0.8
645,662 - +0.0
645,662 - -1.8
645,730 + +0.3
645,730 + -0.4
645,731 - +0.2
645,949 + GFF2926 0.13 -0.4
645,950 - GFF2926 0.13 -0.1
645,953 - GFF2926 0.13 +0.5
645,953 - GFF2926 0.13 +0.7
645,953 - GFF2926 0.13 +0.2
645,994 + GFF2926 0.14 -0.2
645,994 + GFF2926 0.14 +0.3
645,994 + GFF2926 0.14 +0.2
646,060 + GFF2926 0.16 +0.6
646,061 - GFF2926 0.16 -0.3
646,216 - GFF2926 0.21 +0.3
646,216 - GFF2926 0.21 -0.4

Or see this region's nucleotide sequence