Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2909 and GFF2910 are separated by 70 nucleotides GFF2910 and GFF2911 are separated by 32 nucleotides GFF2911 and GFF2912 are separated by 40 nucleotides
GFF2909 - Porin B, at 626,984 to 628,465
GFF2909
GFF2910 - hypothetical protein, at 628,536 to 629,066
GFF2910
GFF2911 - hypothetical protein, at 629,099 to 630,073
GFF2911
GFF2912 - Spermidine/putrescine import ATP-binding protein PotA, at 630,114 to 631,169
GFF2912
Position (kb) 629
630
631 Strain fitness (log2 ratio) -2
-1
0
1
2 at 628.130 kb on + strand, within GFF2909 at 628.244 kb on + strand, within GFF2909 at 628.245 kb on - strand, within GFF2909 at 628.245 kb on - strand, within GFF2909 at 628.245 kb on - strand, within GFF2909 at 628.256 kb on + strand, within GFF2909 at 628.257 kb on - strand, within GFF2909 at 628.268 kb on + strand, within GFF2909 at 628.268 kb on + strand, within GFF2909 at 628.268 kb on + strand, within GFF2909 at 628.268 kb on + strand, within GFF2909 at 628.269 kb on - strand, within GFF2909 at 628.269 kb on - strand, within GFF2909 at 628.271 kb on + strand, within GFF2909 at 628.272 kb on - strand, within GFF2909 at 628.272 kb on - strand, within GFF2909 at 628.310 kb on + strand, within GFF2909 at 628.311 kb on - strand, within GFF2909 at 628.311 kb on - strand, within GFF2909 at 628.359 kb on - strand at 628.681 kb on + strand, within GFF2910 at 628.681 kb on + strand, within GFF2910 at 628.681 kb on + strand, within GFF2910 at 628.681 kb on + strand, within GFF2910 at 628.682 kb on - strand, within GFF2910 at 628.682 kb on - strand, within GFF2910 at 628.682 kb on - strand, within GFF2910 at 628.682 kb on - strand, within GFF2910 at 628.822 kb on + strand, within GFF2910 at 628.823 kb on - strand, within GFF2910 at 628.972 kb on + strand, within GFF2910 at 628.972 kb on + strand, within GFF2910 at 628.972 kb on + strand, within GFF2910 at 628.973 kb on - strand, within GFF2910 at 629.044 kb on - strand at 629.070 kb on + strand at 629.071 kb on - strand at 629.071 kb on - strand at 629.100 kb on + strand at 629.100 kb on + strand at 629.100 kb on + strand at 629.101 kb on - strand at 629.101 kb on - strand at 629.101 kb on - strand at 629.316 kb on + strand, within GFF2911 at 629.317 kb on - strand, within GFF2911 at 629.317 kb on - strand, within GFF2911 at 629.376 kb on + strand, within GFF2911 at 629.376 kb on + strand, within GFF2911 at 629.376 kb on + strand, within GFF2911 at 629.376 kb on + strand, within GFF2911 at 629.377 kb on - strand, within GFF2911 at 629.395 kb on - strand, within GFF2911 at 629.688 kb on + strand, within GFF2911 at 629.688 kb on + strand, within GFF2911 at 629.688 kb on + strand, within GFF2911 at 629.689 kb on - strand, within GFF2911 at 629.721 kb on + strand, within GFF2911 at 629.722 kb on - strand, within GFF2911 at 629.722 kb on - strand, within GFF2911 at 629.722 kb on - strand, within GFF2911 at 629.722 kb on - strand, within GFF2911 at 629.722 kb on - strand, within GFF2911 at 629.769 kb on + strand, within GFF2911 at 629.769 kb on + strand, within GFF2911 at 629.865 kb on + strand, within GFF2911 at 629.866 kb on - strand, within GFF2911 at 629.866 kb on - strand, within GFF2911 at 629.866 kb on - strand, within GFF2911 at 629.866 kb on - strand, within GFF2911 at 629.866 kb on - strand, within GFF2911 at 630.604 kb on - strand, within GFF2912 at 630.920 kb on - strand, within GFF2912 at 630.920 kb on - strand, within GFF2912
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 628,130 + GFF2909 0.77 +0.5 628,244 + GFF2909 0.85 +0.1 628,245 - GFF2909 0.85 -0.7 628,245 - GFF2909 0.85 -0.2 628,245 - GFF2909 0.85 -0.5 628,256 + GFF2909 0.86 +2.1 628,257 - GFF2909 0.86 -0.6 628,268 + GFF2909 0.87 -0.3 628,268 + GFF2909 0.87 -0.9 628,268 + GFF2909 0.87 +0.2 628,268 + GFF2909 0.87 +0.9 628,269 - GFF2909 0.87 +1.5 628,269 - GFF2909 0.87 +1.0 628,271 + GFF2909 0.87 -0.5 628,272 - GFF2909 0.87 +1.4 628,272 - GFF2909 0.87 +0.7 628,310 + GFF2909 0.89 +1.9 628,311 - GFF2909 0.90 -0.8 628,311 - GFF2909 0.90 -0.3 628,359 - +0.4 628,681 + GFF2910 0.27 -0.3 628,681 + GFF2910 0.27 +1.2 628,681 + GFF2910 0.27 -0.6 628,681 + GFF2910 0.27 -0.7 628,682 - GFF2910 0.27 -0.3 628,682 - GFF2910 0.27 +1.7 628,682 - GFF2910 0.27 +0.5 628,682 - GFF2910 0.27 +0.8 628,822 + GFF2910 0.54 -0.3 628,823 - GFF2910 0.54 +1.2 628,972 + GFF2910 0.82 -0.8 628,972 + GFF2910 0.82 -0.2 628,972 + GFF2910 0.82 -1.4 628,973 - GFF2910 0.82 +0.4 629,044 - -1.0 629,070 + -1.3 629,071 - +1.6 629,071 - +1.4 629,100 + -0.8 629,100 + -0.4 629,100 + -0.6 629,101 - -0.0 629,101 - -1.0 629,101 - -0.3 629,316 + GFF2911 0.22 -0.1 629,317 - GFF2911 0.22 -0.7 629,317 - GFF2911 0.22 +1.2 629,376 + GFF2911 0.28 +0.2 629,376 + GFF2911 0.28 -0.3 629,376 + GFF2911 0.28 -1.1 629,376 + GFF2911 0.28 -1.3 629,377 - GFF2911 0.29 -1.0 629,395 - GFF2911 0.30 -2.1 629,688 + GFF2911 0.60 +0.6 629,688 + GFF2911 0.60 +1.0 629,688 + GFF2911 0.60 -0.2 629,689 - GFF2911 0.61 -0.1 629,721 + GFF2911 0.64 +0.6 629,722 - GFF2911 0.64 +0.0 629,722 - GFF2911 0.64 -0.3 629,722 - GFF2911 0.64 +0.3 629,722 - GFF2911 0.64 -1.0 629,722 - GFF2911 0.64 +0.3 629,769 + GFF2911 0.69 +0.2 629,769 + GFF2911 0.69 +0.4 629,865 + GFF2911 0.79 +0.3 629,866 - GFF2911 0.79 +0.1 629,866 - GFF2911 0.79 +0.2 629,866 - GFF2911 0.79 -0.4 629,866 - GFF2911 0.79 +0.2 629,866 - GFF2911 0.79 -0.1 630,604 - GFF2912 0.46 +0.1 630,920 - GFF2912 0.76 -1.1 630,920 - GFF2912 0.76 -0.3
Or see this region's nucleotide sequence