Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2902 and GFF2903 are separated by 77 nucleotides GFF2903 and GFF2904 are separated by 8 nucleotides GFF2904 and GFF2905 are separated by 10 nucleotides
GFF2902 - C4-dicarboxylate transport sensor protein DctB, at 618,164 to 620,041
GFF2902
GFF2903 - Bicarbonate transport ATP-binding protein CmpD, at 620,119 to 620,976
GFF2903
GFF2904 - Putative aliphatic sulfonates transport permease protein SsuC, at 620,985 to 621,806
GFF2904
GFF2905 - hypothetical protein, at 621,817 to 622,788
GFF2905
Position (kb) 620
621
622 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 620.313 kb on - strand, within GFF2903 at 620.313 kb on - strand, within GFF2903 at 620.446 kb on + strand, within GFF2903 at 620.447 kb on - strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.658 kb on - strand, within GFF2903 at 620.658 kb on - strand, within GFF2903 at 621.109 kb on + strand, within GFF2904 at 621.146 kb on + strand, within GFF2904 at 621.223 kb on + strand, within GFF2904 at 621.223 kb on + strand, within GFF2904 at 621.224 kb on - strand, within GFF2904 at 621.224 kb on - strand, within GFF2904 at 621.224 kb on - strand, within GFF2904 at 621.263 kb on + strand, within GFF2904 at 621.263 kb on + strand, within GFF2904 at 621.264 kb on - strand, within GFF2904 at 621.301 kb on + strand, within GFF2904 at 621.301 kb on + strand, within GFF2904 at 621.301 kb on + strand, within GFF2904 at 621.302 kb on - strand, within GFF2904 at 621.302 kb on - strand, within GFF2904 at 621.302 kb on - strand, within GFF2904 at 621.302 kb on - strand, within GFF2904 at 621.425 kb on + strand, within GFF2904 at 621.425 kb on + strand, within GFF2904 at 621.426 kb on - strand, within GFF2904 at 621.427 kb on + strand, within GFF2904 at 621.427 kb on + strand, within GFF2904 at 621.427 kb on + strand, within GFF2904 at 621.427 kb on + strand, within GFF2904 at 621.427 kb on + strand, within GFF2904 at 621.428 kb on - strand, within GFF2904 at 621.428 kb on - strand, within GFF2904 at 621.475 kb on + strand, within GFF2904 at 621.475 kb on + strand, within GFF2904 at 621.476 kb on - strand, within GFF2904 at 621.481 kb on + strand, within GFF2904 at 621.481 kb on + strand, within GFF2904 at 621.482 kb on - strand, within GFF2904 at 621.482 kb on - strand, within GFF2904 at 621.911 kb on + strand at 621.968 kb on + strand, within GFF2905 at 621.969 kb on - strand, within GFF2905 at 622.133 kb on + strand, within GFF2905 at 622.133 kb on + strand, within GFF2905 at 622.187 kb on + strand, within GFF2905 at 622.188 kb on - strand, within GFF2905 at 622.311 kb on - strand, within GFF2905 at 622.311 kb on - strand, within GFF2905 at 622.323 kb on + strand, within GFF2905 at 622.323 kb on + strand, within GFF2905 at 622.324 kb on - strand, within GFF2905 at 622.491 kb on + strand, within GFF2905 at 622.493 kb on + strand, within GFF2905 at 622.494 kb on - strand, within GFF2905 at 622.652 kb on + strand, within GFF2905 at 622.653 kb on - strand, within GFF2905
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 620,313 - GFF2903 0.23 +0.2 620,313 - GFF2903 0.23 +1.2 620,446 + GFF2903 0.38 -0.6 620,447 - GFF2903 0.38 +0.8 620,657 + GFF2903 0.63 -0.6 620,657 + GFF2903 0.63 +0.1 620,657 + GFF2903 0.63 -0.5 620,657 + GFF2903 0.63 +0.3 620,658 - GFF2903 0.63 -0.4 620,658 - GFF2903 0.63 +1.5 621,109 + GFF2904 0.15 +0.1 621,146 + GFF2904 0.20 +1.6 621,223 + GFF2904 0.29 -0.8 621,223 + GFF2904 0.29 -0.1 621,224 - GFF2904 0.29 +0.7 621,224 - GFF2904 0.29 -0.4 621,224 - GFF2904 0.29 +0.1 621,263 + GFF2904 0.34 +0.8 621,263 + GFF2904 0.34 +0.8 621,264 - GFF2904 0.34 -1.2 621,301 + GFF2904 0.38 +0.9 621,301 + GFF2904 0.38 +0.2 621,301 + GFF2904 0.38 +0.5 621,302 - GFF2904 0.39 +0.4 621,302 - GFF2904 0.39 -0.6 621,302 - GFF2904 0.39 +0.6 621,302 - GFF2904 0.39 +0.2 621,425 + GFF2904 0.54 +0.2 621,425 + GFF2904 0.54 +0.8 621,426 - GFF2904 0.54 -0.2 621,427 + GFF2904 0.54 -0.8 621,427 + GFF2904 0.54 -0.9 621,427 + GFF2904 0.54 -0.4 621,427 + GFF2904 0.54 -0.6 621,427 + GFF2904 0.54 +0.1 621,428 - GFF2904 0.54 +0.8 621,428 - GFF2904 0.54 +0.3 621,475 + GFF2904 0.60 +0.2 621,475 + GFF2904 0.60 +0.7 621,476 - GFF2904 0.60 -0.2 621,481 + GFF2904 0.60 -3.0 621,481 + GFF2904 0.60 -0.4 621,482 - GFF2904 0.60 -0.8 621,482 - GFF2904 0.60 -1.0 621,911 + +1.0 621,968 + GFF2905 0.16 +0.3 621,969 - GFF2905 0.16 -0.2 622,133 + GFF2905 0.33 +0.9 622,133 + GFF2905 0.33 +1.1 622,187 + GFF2905 0.38 -0.5 622,188 - GFF2905 0.38 -2.1 622,311 - GFF2905 0.51 +0.6 622,311 - GFF2905 0.51 -0.5 622,323 + GFF2905 0.52 -0.6 622,323 + GFF2905 0.52 -0.2 622,324 - GFF2905 0.52 -0.4 622,491 + GFF2905 0.69 -0.7 622,493 + GFF2905 0.70 +0.3 622,494 - GFF2905 0.70 +0.4 622,652 + GFF2905 0.86 +0.2 622,653 - GFF2905 0.86 -0.1
Or see this region's nucleotide sequence