Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2901 and GFF2902 overlap by 11 nucleotides GFF2902 and GFF2903 are separated by 77 nucleotides GFF2903 and GFF2904 are separated by 8 nucleotides
GFF2901 - C4-dicarboxylate transport transcriptional regulatory protein DctD, at 616,801 to 618,174
GFF2901
GFF2902 - C4-dicarboxylate transport sensor protein DctB, at 618,164 to 620,041
GFF2902
GFF2903 - Bicarbonate transport ATP-binding protein CmpD, at 620,119 to 620,976
GFF2903
GFF2904 - Putative aliphatic sulfonates transport permease protein SsuC, at 620,985 to 621,806
GFF2904
Position (kb) 618
619
620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 617.272 kb on - strand, within GFF2901 at 617.310 kb on + strand, within GFF2901 at 617.310 kb on + strand, within GFF2901 at 617.555 kb on - strand, within GFF2901 at 617.831 kb on + strand, within GFF2901 at 619.203 kb on + strand, within GFF2902 at 619.203 kb on + strand, within GFF2902 at 619.203 kb on + strand, within GFF2902 at 619.203 kb on + strand, within GFF2902 at 619.204 kb on - strand, within GFF2902 at 619.204 kb on - strand, within GFF2902 at 619.317 kb on + strand, within GFF2902 at 619.317 kb on + strand, within GFF2902 at 619.318 kb on - strand, within GFF2902 at 619.318 kb on - strand, within GFF2902 at 619.332 kb on + strand, within GFF2902 at 619.332 kb on + strand, within GFF2902 at 619.557 kb on + strand, within GFF2902 at 619.590 kb on + strand, within GFF2902 at 619.626 kb on + strand, within GFF2902 at 619.627 kb on - strand, within GFF2902 at 619.629 kb on + strand, within GFF2902 at 619.630 kb on - strand, within GFF2902 at 619.719 kb on + strand, within GFF2902 at 619.720 kb on - strand, within GFF2902 at 619.761 kb on + strand, within GFF2902 at 619.761 kb on + strand, within GFF2902 at 619.762 kb on - strand, within GFF2902 at 619.890 kb on + strand at 620.313 kb on - strand, within GFF2903 at 620.313 kb on - strand, within GFF2903 at 620.446 kb on + strand, within GFF2903 at 620.447 kb on - strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.657 kb on + strand, within GFF2903 at 620.658 kb on - strand, within GFF2903 at 620.658 kb on - strand, within GFF2903
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 617,272 - GFF2901 0.34 -1.8 617,310 + GFF2901 0.37 +0.8 617,310 + GFF2901 0.37 +1.2 617,555 - GFF2901 0.55 -1.0 617,831 + GFF2901 0.75 +0.1 619,203 + GFF2902 0.55 +0.3 619,203 + GFF2902 0.55 +0.3 619,203 + GFF2902 0.55 -0.7 619,203 + GFF2902 0.55 +0.9 619,204 - GFF2902 0.55 -1.5 619,204 - GFF2902 0.55 +1.3 619,317 + GFF2902 0.61 +1.1 619,317 + GFF2902 0.61 -0.0 619,318 - GFF2902 0.61 -0.4 619,318 - GFF2902 0.61 +0.8 619,332 + GFF2902 0.62 -0.4 619,332 + GFF2902 0.62 -0.7 619,557 + GFF2902 0.74 +0.4 619,590 + GFF2902 0.76 -1.5 619,626 + GFF2902 0.78 -0.8 619,627 - GFF2902 0.78 -0.5 619,629 + GFF2902 0.78 +0.3 619,630 - GFF2902 0.78 -0.2 619,719 + GFF2902 0.83 +1.1 619,720 - GFF2902 0.83 -0.9 619,761 + GFF2902 0.85 -2.1 619,761 + GFF2902 0.85 -0.3 619,762 - GFF2902 0.85 +0.1 619,890 + -1.1 620,313 - GFF2903 0.23 +0.2 620,313 - GFF2903 0.23 +1.2 620,446 + GFF2903 0.38 -0.6 620,447 - GFF2903 0.38 +0.8 620,657 + GFF2903 0.63 -0.6 620,657 + GFF2903 0.63 +0.1 620,657 + GFF2903 0.63 -0.5 620,657 + GFF2903 0.63 +0.3 620,658 - GFF2903 0.63 -0.4 620,658 - GFF2903 0.63 +1.5
Or see this region's nucleotide sequence